PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g29800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | B3 | ||||||||
Protein Properties | Length: 834aa MW: 96856.2 Da PI: 7.8307 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.9 | 8.9e-14 | 17 | 96 | 10 | 99 |
HHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 10 vlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++g l +p f+ ++ +g+ e+++ + ++g++W+vk+ ++++ + +++W +Fvk+ +L++g ++vF+++g++ef v++f++ CA01g29800 17 DFNNG-LKIPIGFL-KYlKGQ--EHVKCAVLKRDGKKWRVKV--NGRK---LEEGNWGKFVKEFDLQVGNILVFSHEGSMEF--EVSIFDS 96 55555.********.554777..6789***************..7776...77999*******************9998999..9999986 PP | |||||||
2 | B3 | 47.7 | 2.7e-15 | 176 | 251 | 12 | 87 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +++l lp +fa ++++ ++ + +l+++de+ rsW++k++ ++ + r ++++GW++F +n +kegD + F+++ + CA01g29800 176 FRACLFLPQQFALANDLTNK-KCKLIIRDERQRSWKLKICSsSNPRPRAYIGSGWRKFIAENSIKEGDRIKFEVVTN 251 46779**********87754.4599**************77444444589***********************7764 PP | |||||||
3 | B3 | 50 | 5.3e-16 | 301 | 381 | 5 | 88 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 +++++ + +g l +pk+fa ++g+ + ++ +l+++de+ rsW++kl + +s r ++++G ++F +n LkegD ++F+++ + CA01g29800 301 TIRPYCFLRGTLNVPKQFAIANGLTN-KKCELIVRDERQRSWNLKL--SSGSTRSYIGDGFRKFIADNCLKEGDDIMFEVITNG 381 5678889999************8885.5569***************..9999999************************88753 PP | |||||||
4 | B3 | 37.5 | 4.1e-12 | 466 | 548 | 5 | 88 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 +++ ++++g+l++pkkfa ++g+ ++ + l+++de+ rsW++kl++ +++ + +++ G ++ +n kegD + F+++ + CA01g29800 466 TITQKMFSRGLLYVPKKFAIANGLTNK-KCGLIVRDERQRSWNLKLSFGGTQAQPYIGYGLRKLIAENCTKEGDRIKFEVVTNG 548 678999****************77654.3479***********************************************77643 PP | |||||||
5 | B3 | 58.8 | 9.9e-19 | 577 | 661 | 5 | 93 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 +++++ l++g+l+lpk+fa ++ +++ ++ +l+++de+ +sW++kl + ++ +++++GW++Fv +n LkegD ++F+++ s++++v CA01g29800 577 TIREYCLSRGLLYLPKQFAFANCLIN-KKHDLIIRDERQKSWNLKL--CYCQTDVYIGDGWRKFVADNCLKEGDRIMFEVVT-SGETPV 661 5788999************9995553.3348***************..667777*************************765.555555 PP | |||||||
6 | B3 | 44.8 | 2.2e-14 | 720 | 798 | 5 | 87 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +++ + ++ l++p +fa+++g++ ++ +++l+de+ r W+v l + + ++ +t+GW +F +ngL++gD F+l+++ CA01g29800 720 TIKRYCIRKTELYFPLDFAKSNGLNRKC--EMILKDETERCWSVWL--GRLGTHFGITRGWTKFRTENGLQVGDAYKFELIKN 798 55677888899**************666..8***************..999999*************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-17 | 3 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-18 | 5 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.744 | 7 | 97 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.19E-14 | 8 | 95 | No hit | No description |
SMART | SM01019 | 7.0E-13 | 10 | 97 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.0E-11 | 18 | 96 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.6E-16 | 161 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-18 | 162 | 259 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.20E-13 | 164 | 247 | No hit | No description |
PROSITE profile | PS50863 | 13.042 | 165 | 262 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-10 | 165 | 262 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-13 | 176 | 253 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-17 | 296 | 389 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-16 | 297 | 388 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.434 | 297 | 391 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.2E-14 | 298 | 391 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-13 | 301 | 383 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.06E-12 | 309 | 376 | No hit | No description |
SuperFamily | SSF101936 | 4.12E-12 | 461 | 556 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-11 | 461 | 557 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.432 | 462 | 558 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.5E-7 | 463 | 558 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.8E-10 | 465 | 550 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.64E-9 | 473 | 543 | No hit | No description |
SuperFamily | SSF101936 | 8.44E-20 | 572 | 670 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-19 | 572 | 665 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.958 | 573 | 667 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.1E-16 | 574 | 668 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-16 | 577 | 662 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.20E-13 | 581 | 652 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.3E-19 | 711 | 806 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-20 | 711 | 807 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.41E-13 | 715 | 808 | No hit | No description |
PROSITE profile | PS50863 | 12.788 | 716 | 809 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-17 | 716 | 816 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.0E-13 | 719 | 800 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 834 aa Download sequence Send to blast |
MKIPPKKPHF FKPILPDFNN GLKIPIGFLK YLKGQEHVKC AVLKRDGKKW RVKVNGRKLE 60 EGNWGKFVKE FDLQVGNILV FSHEGSMEFE VSIFDSSQCS REYSEYMQED VIEDEMEVDE 120 EEDEEDEYVV EEEEEDEYEE EEDEVEEEEE EEVVTDDNSC ERSYFEYTIT PYCLSFRACL 180 FLPQQFALAN DLTNKKCKLI IRDERQRSWK LKICSSSNPR PRAYIGSGWR KFIAENSIKE 240 GDRIKFEVVT NGKTPIWKFQ VDTDYQTPMR NLNIDLSNKT SSHAEAASTN KAFVQSHFEC 300 TIRPYCFLRG TLNVPKQFAI ANGLTNKKCE LIVRDERQRS WNLKLSSGST RSYIGDGFRK 360 FIADNCLKEG DDIMFEVITN GETPIWKFKV VTGGETAVRN PDCVLSHKRR NLNKEITSWN 420 RETTGRLEAQ RERMLLSPNI DLPNMTSSHA EADTNKPFVR SHFVCTITQK MFSRGLLYVP 480 KKFAIANGLT NKKCGLIVRD ERQRSWNLKL SFGGTQAQPY IGYGLRKLIA ENCTKEGDRI 540 KFEVVTNGKT PIWKFQTSSH AEAATNKPFV QSHFECTIRE YCLSRGLLYL PKQFAFANCL 600 INKKHDLIIR DERQKSWNLK LCYCQTDVYI GDGWRKFVAD NCLKEGDRIM FEVVTSGETP 660 VWEFRVNEAK TPLQKYQGKF LMFQNISFYI MKKPSNTSPL NAQVSTSTSG EDDHPYFIST 720 IKRYCIRKTE LYFPLDFAKS NGLNRKCEMI LKDETERCWS VWLGRLGTHF GITRGWTKFR 780 TENGLQVGDA YKFELIKNGE IPIAHFHCKF SFNSNVFLSR LSSMFDSIHK YHY* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016549257.1 | 0.0 | PREDICTED: B3 domain-containing protein REM10-like isoform X1 | ||||
TrEMBL | A0A2G3ANT5 | 0.0 | A0A2G3ANT5_CAPAN; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 2e-37 | B3 family protein |