PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g29750 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | B3 | ||||||||
Protein Properties | Length: 171aa MW: 19567.9 Da PI: 9.0311 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.8 | 4.1e-18 | 21 | 107 | 4 | 94 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +++ ++l++g l++p kfa+e+g+ ++ + l+++de+ rsW++++ + ++ +++ W++F+ an++k+gD ++F+++ s+ ++v CA01g29750 21 CTVKQYYLTNGYLRIPSKFAKENGLTNK-ECGLIIRDERQRSWNLRM--YTSCHHVCIGGRWRKFCVANDIKVGDQIMFEVVT-SGVQPVW 107 5678999****************76643.346999************..9999999************************765.5555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.8E-19 | 16 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.519 | 18 | 112 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.35E-18 | 18 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 4.8E-12 | 19 | 113 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.7E-16 | 21 | 108 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.35E-14 | 26 | 97 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
KAFLHAEAAP HNPFGESQFV CTVKQYYLTN GYLRIPSKFA KENGLTNKEC GLIIRDERQR 60 SWNLRMYTSC HHVCIGGRWR KFCVANDIKV GDQIMFEVVT SGVQPVWKFH GKVSHLKQLL 120 LFSRFFIVIV EELIVTVGKE HMFVVLMIDN YGPSSLLVIF CMLYHGNQAP * |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009283 | 3e-91 | AP009283.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0216M19, complete sequence. | |||
GenBank | HG975520 | 3e-91 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016549299.1 | 2e-69 | PREDICTED: putative B3 domain-containing protein REM15 isoform X3 | ||||
Refseq | XP_016549320.1 | 6e-70 | PREDICTED: B3 domain-containing protein REM14-like isoform X7 | ||||
TrEMBL | A0A1U8F104 | 1e-68 | A0A1U8F104_CAPAN; B3 domain-containing protein REM14-like isoform X7 | ||||
TrEMBL | A0A2G3ANJ4 | 3e-68 | A0A2G3ANJ4_CAPAN; Uncharacterized protein | ||||
STRING | XP_009612446.1 | 6e-55 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31630.1 | 2e-14 | B3 family protein |