PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g17540
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 562aa    MW: 62632.1 Da    PI: 7.6444
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g17540genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.21.9e-05361388330
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
         HLH   3 rahnerErrRRdriNsafeeLrellPka 30 
                  +h+ +Er RR++i +++  L++l+P +
  CA01g17540 361 NSHSLAERVRREKISERMKFLQDLVPGC 388
                 58************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-13356445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.31E-9356430No hitNo description
PROSITE profilePS5088814.792358425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-13359439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-5364431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MDMSSKNDTE RQKRNEDATS FETPNMSLDW QLSGSNFTNA SMEMIPYSNS FVDSIFPTIS  60
DRTTNSPHLS FYGNNAQINH CTVNQHETAA IGSGPLRGGV ETVDRTVVMS WNPPNVMLKG  120
SMFVPPIPGT IPQSFAQLPA DLGFIERAAR FSCFSGGNFS DMMNPFSVPE STKPCYRGLA  180
PTWRTKEVFA RNRLNSTSAV DPRKQNMRSK VGSSKNVSLP NENKTNEQSP LKNEKKNEVF  240
SRSQDERNES VGLSGNESDE AECSGHQEEM GSALLESSVK GLDSRKRRRY GQDTELDRMK  300
GAQQLPAEPE REQTKTQKGD GRLNSPSSKD GRKNSKQRSQ SSDPTKEEYI HVRARRGQAT  360
NSHSLAERVR REKISERMKF LQDLVPGCDK VSFMPFVVHV FWCLIFQVTG KAVMLDEIIN  420
YVQSLQRQVE FLTMKLSTVN PWLDFNLGLL AKDVRTTGPS SSLAFPSDNT AITYTSLHGW  480
QSGLLQSGFP GDGNCIDVFR RSINSQFASM SDGYSDPSSQ VPNVWDNQLH NVVKMGFNSS  540
MPLDCQDLSK CFTCSCMFLS C*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284288RKRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-161HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016578995.10.0PREDICTED: transcription factor bHLH49-like
RefseqXP_016578998.10.0PREDICTED: transcription factor bHLH49-like
RefseqXP_016579001.10.0PREDICTED: transcription factor bHLH49-like
RefseqXP_016579004.10.0PREDICTED: transcription factor bHLH49-like
TrEMBLA0A1U8H6780.0A0A1U8H678_CAPAN; transcription factor bHLH49-like
TrEMBLA0A1U8HCW40.0A0A1U8HCW4_CAPAN; Transcription factor bHLH74
STRINGPGSC0003DMT4000227040.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28712150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.37e-84bHLH family protein