PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g16650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 174aa MW: 19693.2 Da PI: 10.4442 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.2e-05 | 50 | 72 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H CA01g16650 50 FECQYCHREFANSQALGGHQNAH 72 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.38E-6 | 47 | 77 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.8E-4 | 48 | 76 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 7.8E-6 | 49 | 74 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.739 | 50 | 77 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 52 | 72 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MGESSLHSSL SSSSPRQVKL FGFQVTECDK TTEPPPPPPQ PSHDVEGKRF ECQYCHREFA 60 NSQALGGHQN AHKKERQRTR RAHQIGDHQP RFRQVVPMIN AHAVRSGLIN NNNKSIMSRY 120 YGARLRSQVL SGAPLRFQIH MRQQQLMAVQ NPVDINNNEA EVDLHLRLAP SRD* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015080072.1 | 3e-73 | zinc finger protein 6-like | ||||
TrEMBL | A0A2G3AIW2 | 1e-125 | A0A2G3AIW2_CAPAN; Uncharacterized protein | ||||
STRING | Solyc01g060420.2.1 | 1e-70 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10563 | 17 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06650.1 | 9e-15 | C2H2 family protein |