PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g96350
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 195aa    MW: 21939.3 Da    PI: 10.3739
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g96350genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.92.3e-221663348
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklye 48
                 en+sn qvtfskRr+g++KKA+EL++LC+ae+a+++fs+   +k+y 
  CA00g96350 16 MENESNLQVTFSKRRAGLFKKASELCTLCGAEIAIVVFSPgkANKVYS 63
                69************************************9722456665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-28667IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.74654IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.8E-24779IPR002100Transcription factor, MADS-box
CDDcd002653.76E-31777No hitNo description
PRINTSPR004045.9E-16828IPR002100Transcription factor, MADS-box
PfamPF003191.4E-241564IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-162843IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-164364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MPRRRKGRKR VDIVKMENES NLQVTFSKRR AGLFKKASEL CTLCGAEIAI VVFSPGKANK  60
VYSFDHPSVE LLVDRFLGRD LPPPNNEGRH NHLLMNHRNV ILRELNKEVM NMEEILQMEK  120
SRGESILEIM RRANGGWWEF LKQDVEKEAQ QQQMVTNVGL PFLTFGSAFS PTNGARAISS  180
SHGHNVGAPL ANMA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
115PRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016552915.11e-121PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK27e-41AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A2G2V9T71e-137A0A2G2V9T7_CAPBA; Uncharacterized protein
STRINGSolyc01g106730.1.14e-81(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-43AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]