PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g95620
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 306aa    MW: 34584.7 Da    PI: 9.6218
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g95620genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.3e-13152197454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  h + ErrRR+++N+ f+ Lr+llP       +K +Ka++L  +++YI+ L
  CA00g95620 152 HHMISERRRREKLNENFQHLRSLLPLG-----TKKDKASVLASTTDYISCL 197
                 68899********************97.....7***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.964148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.71E-11150202No hitNo description
SuperFamilySSF474597.98E-17150215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.4E-11152197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-15152215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-13154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MNNLFPNDFS NQTPPPPTTT TTRKAIILPI DQNLHSSSSS SSEYSPLYLN EIQKLTQFPK  60
IEGEDDALRQ AYLAVLSSSS SPSPSPSLSR GQTTDKLTRM SSAFTKFRPD NYVSTSCKHH  120
NNNILKRYMT FFNNLYMINR QEGVRATTTQ VHHMISERRR REKLNENFQH LRSLLPLGTK  180
KDKASVLAST TDYISCLKDQ VKELCKRNEI LEAQLLNKKE AFQFQQNESG KVAVYITNVE  240
ERIVDLQVIA RGKCSIVDLV ICLMKFLKMV NFVNVVAIDA NTTLVQSCPV AVITLRLTIQ  300
VYILS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161ERRRRE
2157162RRRREK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755242e-78HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016540367.10.0PREDICTED: putative transcription factor bHLH041
TrEMBLA0A2G2XJS70.0A0A2G2XJS7_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000008831e-111(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45672339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-31bHLH family protein