PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g82930
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family CPP
Protein Properties Length: 445aa    MW: 48487.7 Da    PI: 7.727
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g82930genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.61.4e-143170242
         TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42
                ++k+CnCk+s+Clk+YCeCfa+g +C+  C+C++C+N+ e+
  CA00g82930 31 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCNNCHNNVEN 70
                89**************************.********9875 PP
2TCR51.42.1e-16115154140
         TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                 k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  CA00g82930 115 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 154
                 589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.2E-163070IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.83231155IPR005172CRC domain
PfamPF036381.5E-113267IPR005172CRC domain
SMARTSM011148.4E-20115156IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.9E-13118153IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MLIPTVFRKP DSPRARSRQG TSEVKDGTPK KQKQCNCKHS RCLKLYCECF ASGIYCDGCN  60
CNNCHNNVEN EPARREAVEA TLERNPHAFR PKIASSPHGA RDNKEETGDG LVLAKHNKGC  120
HCKKSGCLKK YCECFQANIL CSENCKCMDC KNFEGSEERQ ALFHGDHANN MAYLQQAANA  180
AITGAIGSSG YGSPPVTKKR KAQELFFGST LKDPVHRHGQ LQQGNHIKSS ALPSLSSIPG  240
PCVSNAATVG PSKFTYRSLL ADLIQPQDLK ELCSVLVVYS GEAAKMLADE KDASQKQAEG  300
QTEASLASST QERVQNQKDS GTDKDMHDCC SSGDQGEKIS MEESSLDGAD VSKRRPMSPG  360
TLALMCDESD AMFAAAVTSP NDLATLSSNT SSQLPHGQRV TETYGEQERI VLTKFRDCLN  420
RLITLGEIKG KFLFYFCPNL VLIH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-32231642132Protein lin-54 homolog
5fd3_B2e-32231642132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-159HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016540506.10.0PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD11e-179TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2G2YUK10.0A0A2G2YUK1_CAPAN; Protein tesmin/TSO1-like CXC 6
STRINGPGSC0003DMT4000008240.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-173Tesmin/TSO1-like CXC domain-containing protein