PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g52160
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRF
Protein Properties Length: 370aa    MW: 42072 Da    PI: 8.641
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g52160genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.85.2e-2578121144
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e
  CA00g52160  78 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 121
                 79***************************************986 PP
2QLQ52.51.5e-181145236
         QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                +FTa+Q+q+L++Q+l+yK +++++P+P++Ll  i+
  CA00g52160 11 PFTATQWQELEHQALIYKFMVSGMPIPADLLYTIR 45
                8*****************************97775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.8E-101046IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.1041146IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.2E-141144IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.94178122IPR014977WRC domain
PfamPF088793.4E-2179121IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MMSNTARSRF PFTATQWQEL EHQALIYKFM VSGMPIPADL LYTIRRSLDS SLSSKLILHQ  60
PHHIGWNCFQ MGFGKKIDPE PGRCRRTDGK KWRCSKEAYP DSKYCERHMH RGRNRSRKPV  120
EIMTSNTSTT TRTTPPTAIP ISSITKNTNN PSTCSPTSFS YLTSSSSAHE PHHHPFLYPH  180
SSSSRPPPIT QDHTPKFLLE STAYSRNGYG DGMKEEVDEH VFFSEASGTM RSTCGSNSVD  240
DTWQLSALTM SSSPMCHLKQ RTYSPSQSTT GHSAASYLQL QSFNNDSSIL QQQQRQYYHD  300
LPMKIETEDH QPKKVMHHFF DEWPPKDNKD SWLDSDDKFL GLSKTQLSIS IPNPSQDFFI  360
TTNGKLFNS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754467e-97HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016539546.10.0PREDICTED: LOW QUALITY PROTEIN: growth-regulating factor 1-like
TrEMBLA0A2G2XZ800.0A0A2G2XZ80_CAPAN; Uncharacterized protein (Fragment)
STRINGXP_009767378.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7432384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.19e-53growth-regulating factor 5