PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA00g25300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 195aa MW: 21254.2 Da PI: 4.7105 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.5 | 2.3e-11 | 25 | 65 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W ++E+ ll+++ +++G +W+ +a+++g +++ qc++++ CA00g25300 25 WNADEEMLLLEGLEMYGLANWAEVAEHVG-TKSKLQCIEHYK 65 *****************************.***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.21E-13 | 17 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 22.793 | 20 | 72 | IPR017884 | SANT domain |
SMART | SM00717 | 7.3E-11 | 21 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-8 | 24 | 67 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-11 | 25 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.69E-6 | 40 | 67 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MSGICLKDSF YEQDNLSFPL ICADWNADEE MLLLEGLEMY GLANWAEVAE HVGTKSKLQC 60 IEHYKSIYIS SPCFPLPDMS HVMGKSREEL LAMAKEQGYA APGEVNVKEE SPFSARIKME 120 DQREENSAGL ASVGGSASGK LAGAGKRTSA VLNSKENHDS IKLEGISCSS FKSQKLVMLT 180 DCVLLLYHAF ECSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6cw3_E | 2e-16 | 17 | 80 | 57 | 120 | Transcriptional adapter 2 |
6cw3_G | 2e-16 | 17 | 80 | 57 | 120 | Transcriptional adapter 2 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT014608 | 0.0 | BT014608.1 Lycopersicon esculentum clone 134091F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016580485.1 | 1e-104 | PREDICTED: transcriptional adapter ADA2 isoform X1 | ||||
Swissprot | Q75LL6 | 2e-53 | TADA2_ORYSJ; Transcriptional adapter ADA2 | ||||
TrEMBL | A0A1U8HAU7 | 1e-102 | A0A1U8HAU7_CAPAN; Transcriptional adapter | ||||
TrEMBL | A0A2G2Z1X1 | 1e-102 | A0A2G2Z1X1_CAPAN; Transcriptional adapter | ||||
STRING | XP_009803647.1 | 4e-93 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2447 | 12 | 15 |
Publications ? help Back to Top | |||
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