PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_48179
Common NameKK1_028832, KK1_043424, KK1_049522
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 317aa    MW: 35383.3 Da    PI: 5.1993
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_48179genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding452.5e-141663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l ++    G g+W+ +ar  g+ R++k+c++rw +yl
    C.cajan_48179 16 KGLWSPEEDDKLMNYMMNSGQGCWSDVARNAGLQRCGKSCRLRWINYL 63
                     678*******************************************97 PP
2Myb_DNA-binding52.41.2e-1669112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+el+++++ +lG++ W+ Ia++++ gRt++++k++w++
    C.cajan_48179  69 RGAFSPQEEELIIHLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 112
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.9331163IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-231166IPR009057Homeodomain-like
SuperFamilySSF466896.25E-2814110IPR009057Homeodomain-like
SMARTSM007174.6E-101565IPR001005SANT/Myb domain
PfamPF002493.4E-131663IPR001005SANT/Myb domain
CDDcd001677.11E-91963No hitNo description
PROSITE profilePS5129425.91864118IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-2667119IPR009057Homeodomain-like
SMARTSM007174.9E-1668116IPR001005SANT/Myb domain
PfamPF002491.9E-1569112IPR001005SANT/Myb domain
CDDcd001678.00E-1271111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MRKPEAASGN NNKLRKGLWS PEEDDKLMNY MMNSGQGCWS DVARNAGLQR CGKSCRLRWI  60
NYLRPDLKRG AFSPQEEELI IHLHSLLGNR WSQIAARLPG RTDNEIKNFW NSTIKKRLKN  120
LSSNNTSPNA SESSYEPNNK DLNMAGFTTS NDQHQHPDFM PMFNSSSPSP SMHATVLNSI  180
IDRLPMLEHG LNMPASGGGF FNGTGPCFSQ SGIDHNKGLY LENGGIFGSV NIGAEGEMYV  240
PPLESVSTTS DHNLKVESTC NTDTNNSYFD DINSILNNCN NRAGVENLFQ EELTIGEWDL  300
EELMKDVSSF PFLDFSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-271111822128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1 and its close homologs, including NAC043/NST1, NAC066/NST2, NAC101/VND6 and NAC030/VND7. Is required for functional expression of a number of secondary wall-associated transcription factors and secondary wall biosynthetic genes involved in cellulose, xylan and lignin synthesis. Functions redundantly with MYB46 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). {ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_48179
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020206225.10.0transcription factor MYB83
RefseqXP_020209436.10.0transcription factor MYB83
RefseqXP_020233183.10.0transcription factor MYB83
SwissprotQ9C6U16e-79MYB83_ARATH; Transcription factor MYB83
TrEMBLA0A151UEN00.0A0A151UEN0_CAJCA; Transcription factor MYB46
STRINGXP_007132019.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.15e-67myb domain protein 83
Publications ? help Back to Top
  1. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]
  2. Piya S,Kihm C,Rice JH,Baum TJ,Hewezi T
    Cooperative Regulatory Functions of miR858 and MYB83 during Cyst Nematode Parasitism.
    Plant Physiol., 2017. 174(3): p. 1897-1912
    [PMID:28512179]