PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_42090
Common NameKK1_047793
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family B3
Protein Properties Length: 308aa    MW: 34125.7 Da    PI: 7.2085
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_42090genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.94.5e-24138233198
                    EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                    f+k+lt sd++++g +++p++ ae++   +    s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F   + +++el++
  C.cajan_42090 138 FCKTLTASDTSTHGGFSVPRRAAEDCfpPLR--PSQELVANDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVNQKNLVSGDAVLFL--RGENGELRL 229
                    99************************76555..4569************************************************..449999999 PP

                    EEE- CS
             B3  95 kvfr 98 
                    ++++
  C.cajan_42090 230 GIRK 233
                    9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.41E-41129245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-37131244IPR015300DNA-binding pseudobarrel domain
CDDcd100172.99E-23136233No hitNo description
PROSITE profilePS5086313.225138235IPR003340B3 DNA binding domain
SMARTSM010194.2E-23138235IPR003340B3 DNA binding domain
PfamPF023623.4E-22138234IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEIDLNDAVF EADEKSASYD GECEKGAPCV CSLSSPTCSS SGSSSARVSS SYLELWHACA  60
GPLTSLTKKG NMVVYFPQGH LEQAASFSPF SNYTRGVLEI LGCVQLAGLY LEQKDREELR  120
ANEEGNETTP AKSTPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLRPS QELVANDLHG  180
VEWKFRHIYR GQPRRHLLTT GWSIFVNQKN LVSGDAVLFL RGENGELRLG IRKAARPRNG  240
LPESIVGSQS YYPNFLSSVA NAIFAKSMFH VFYSPRYYIN GSDFLFCKMF ELHTLIIGPL  300
ISILSWKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-725427622267Auxin response factor 1
4ldw_A1e-725427622267Auxin response factor 1
4ldw_B1e-725427622267Auxin response factor 1
4ldx_A1e-725427622267Auxin response factor 1
4ldx_B1e-725427622267Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_42090
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ6172711e-153FJ617271.1 Lotus japonicus auxin response factor 4 (ARF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150222.11e-142hypothetical protein PHAVU_005G136900g
SwissprotQ9ZTX93e-98ARFD_ARATH; Auxin response factor 4
TrEMBLA0A151QN840.0A0A151QN84_CAJCA; Auxin response factor 4
STRINGXP_007150222.11e-142(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15884610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.11e-100auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]