PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_41232 | ||||||||
Common Name | KK1_043289 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 88aa MW: 10439.3 Da PI: 10.7012 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.5 | 7.4e-09 | 20 | 58 | 9 | 47 |
HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 d l++ + k++G++ Wk Ia+++ +++t q+ s+ qk+ C.cajan_41232 20 DRLFLLGLKRFGKRKWKDIAQKVLLTKTKTQIASHAQKF 58 6789999******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 1.22E-4 | 20 | 59 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-5 | 20 | 54 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.99E-8 | 20 | 64 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.4E-6 | 20 | 57 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 4.1E-10 | 20 | 62 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MIEVGIKSFK YLQSFLLFCD RLFLLGLKRF GKRKWKDIAQ KVLLTKTKTQ IASHAQKFFL 60 RKSSVKIRRN IHDLTLDDDA GFEYDQQN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_41232 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018813691.1 | 1e-17 | PREDICTED: transcription factor DIVARICATA | ||||
Refseq | XP_023543041.1 | 2e-17 | transcription factor DIVARICATA-like | ||||
TrEMBL | A0A151QZD6 | 2e-56 | A0A151QZD6_CAJCA; Myb-like protein J | ||||
STRING | XP_006485458.1 | 5e-16 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16777 | 4 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 1e-14 | MYB family protein |