PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_39134 | ||||||||
Common Name | KK1_038055 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | NF-YC | ||||||||
Protein Properties | Length: 234aa MW: 26331.7 Da PI: 6.8027 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 45.1 | 2.2e-14 | 85 | 122 | 1 | 35 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkaded 35 ql++fw++q ie++ dfknh+lPlarikki+kaded C.cajan_39134 85 QLQMFWSNQmqeIEQTIDFKNHSLPLARIKKIMKADED 122 89******988889***********************9 PP | |||||||
2 | NF-YC | 34.7 | 3.7e-11 | 121 | 154 | 69 | 102 |
NF-YC 69 nkrrtlkksdiaaavtrtdifdflvdivprdelk 102 +rrtl+k+diaaa++r ++fdflvdi+prdelk C.cajan_39134 121 EDRRTLQKNDIAAAISRNEVFDFLVDIIPRDELK 154 579****************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.68E-13 | 64 | 144 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.4E-7 | 99 | 122 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.4E-7 | 123 | 150 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MDKPEQAQQQ HHQQQQHVIG VAAGASQMAY SSHYQTAPMM ASGTPAVAVP SPTQPPPAFS 60 SSAHQLAYQQ AQHFHHQQQQ HQQQQLQMFW SNQMQEIEQT IDFKNHSLPL ARIKKIMKAD 120 EDRRTLQKND IAAAISRNEV FDFLVDIIPR DELKEEGLGI TKATIPLVGS PADMPYYYVP 180 PQHPAGPPGM IMGKPVDQAA LYPTQQPRPP MAFMPWPHSQ PQQQQPPQQQ QTDS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 128 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_39134 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098376 | 1e-131 | BT098376.1 Soybean clone JCVI-FLGm-12K24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020202087.1 | 1e-127 | nuclear transcription factor Y subunit C-2 | ||||
Swissprot | Q655V5 | 1e-44 | NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | A0A151RDX8 | 1e-167 | A0A151RDX8_CAJCA; Nuclear transcription factor Y subunit C-2 | ||||
STRING | XP_007149200.1 | 1e-113 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12372 | 28 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 8e-46 | nuclear factor Y, subunit C2 |
Publications ? help Back to Top | |||
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