PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_38664 | ||||||||
Common Name | KK1_041671 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB | ||||||||
Protein Properties | Length: 253aa MW: 29753.7 Da PI: 9.2242 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.8 | 5e-18 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd+ll ++v ++G g+W++++++ g++R++k+c++rw +yl C.cajan_38664 16 KGPWTSEEDKLLTEYVCLHGEGRWSSVSKYTGLNRSGKSCRLRWVNYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.9e-16 | 70 | 113 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g T+ E+e ++++++ lG++ W+tIa++++ gRt++++k++w+++ C.cajan_38664 70 GQLTPLEEETIIELHATLGNK-WSTIAKYLP-GRTDNEIKNYWRTH 113 677999***************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.488 | 11 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-31 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-15 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-17 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-22 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.95E-10 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 19.116 | 68 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-13 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-15 | 69 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-24 | 71 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.65E-10 | 73 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MVTMMGSLST EKGWKKGPWT SEEDKLLTEY VCLHGEGRWS SVSKYTGLNR SGKSCRLRWV 60 NYLRPGLKKG QLTPLEEETI IELHATLGNK WSTIAKYLPG RTDNEIKNYW RTHFGKKRER 120 SKHEKKLGRR KPKVLKQKQQ QPHIVSITSR EETKNQTKTF ETQNNMQQEM GFLYPTIEHQ 180 YHVPLMHEIE GFSSTWPNTI VDDDDDSWFS LWDFGERFED YVNQFSKCVM PNQATFGVGV 240 DSMQNHDKTF LFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-26 | 16 | 117 | 27 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 115 | 130 | KKRERSKHEKKLGRRK |
2 | 116 | 131 | KRERSKHEKKLGRRKP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_38664 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT099100 | 1e-121 | BT099100.1 Soybean clone JCVI-FLGm-16H10 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020205004.2 | 0.0 | transcription factor MYB24 | ||||
TrEMBL | A0A151R3H7 | 0.0 | A0A151R3H7_CAJCA; Transcription factor MYB48 | ||||
STRING | GLYMA08G27660.1 | 1e-122 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30210.1 | 1e-50 | myb domain protein 121 |