PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_37895 | ||||||||
Common Name | KK1_040847 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 256aa MW: 28578.1 Da PI: 7.7061 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.0002 | 101 | 123 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H C.cajan_37895 101 FSCNYCQRKFYSSQALGGHQNAH 123 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.74E-6 | 98 | 128 | No hit | No description |
PROSITE profile | PS50157 | 11.427 | 101 | 128 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 103 | 123 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MELLLSEPSP SENLNIPFSE TPPPCSKPVP SMDIQKEKRD DKKHPRESDP HLLLDLSTPD 60 TDSSDESKPE LNLINCIDTN LSMNSSESSH GQGDELEPRI FSCNYCQRKF YSSQALGGHQ 120 NAHKRERTLA KRGHKAGASV SIDFAHRYSS MASLPLHGSY NRSLGIQAHS MINKPSYKTP 180 FFGLPRSHSQ NGWQRRPMNL HVGAETESSL AGGIPLLGKF SPRMVPEGYG GYWLDSITHL 240 KTKQEELQKL DLSLKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. Involved in the regulation of vegetative development and fertility. Modulates red light signaling in seedling photomorphogenesis. {ECO:0000269|PubMed:24808098}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_37895 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by abscisic acid (ABA). {ECO:0000269|PubMed:24808098}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020204395.1 | 0.0 | zinc finger protein 1 | ||||
Swissprot | Q39262 | 7e-34 | ZFP3_ARATH; Zinc finger protein 3 | ||||
TrEMBL | A0A151R5P8 | 0.0 | A0A151R5P8_CAJCA; Zinc finger protein 3 | ||||
STRING | GLYMA15G00645.2 | 1e-127 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1439 | 31 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10970.1 | 4e-37 | C2H2 family protein |
Publications ? help Back to Top | |||
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