PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_37021 | ||||||||
Common Name | KK1_006929, KK1_039090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | C3H | ||||||||
Protein Properties | Length: 111aa MW: 12726.6 Da PI: 9.0028 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.2 | 2.8e-08 | 50 | 73 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +lC + + tG+C++G++Ck+ H+ C.cajan_37021 50 PPLCFHLLNTGFCRHGESCKYLHP 73 58999999***************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.55E-14 | 4 | 44 | No hit | No description |
Pfam | PF06220 | 3.3E-9 | 5 | 39 | IPR013085 | Zinc finger, U1-C type |
SuperFamily | SSF90229 | 1.2E-6 | 47 | 75 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0011 | 47 | 74 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.056 | 47 | 75 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.8E-6 | 50 | 73 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-5 | 52 | 72 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
MPARKFYCDY CDKQFQDTPA DRKRHVKGIL HQQAKARWYD SFKQIPNPNP PLCFHLLNTG 60 FCRHGESCKY LHPTKSPIET TPSPGNVLNL PPSLQPPPQG GYPHLPFLDW G |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_37021 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020202940.1 | 2e-78 | zinc finger CCCH domain-containing protein 3 | ||||
Refseq | XP_020210656.1 | 2e-78 | zinc finger CCCH domain-containing protein 3 | ||||
Swissprot | Q0JP11 | 1e-28 | C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | A0A151U4N4 | 4e-77 | A0A151U4N4_CAJCA; Zinc finger CCCH domain-containing protein 3 | ||||
STRING | XP_007145029.1 | 2e-53 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11959 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 4e-19 | C3H family protein |
Publications ? help Back to Top | |||
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