PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_33809 | ||||||||
Common Name | KK1_036735 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | bHLH | ||||||||
Protein Properties | Length: 298aa MW: 34390 Da PI: 4.6916 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.8 | 3.4e-07 | 173 | 216 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ r RR++i + ++L +l+P +K++ ae+L A +Y+++Lq C.cajan_33809 173 IAARERRRKITVKTQQLGKLVPGG-----PKMNTAEMLHAAAKYVNYLQ 216 56799*****************95.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.02E-11 | 164 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.22E-6 | 164 | 219 | No hit | No description |
PROSITE profile | PS50888 | 11.642 | 166 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-8 | 172 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.1E-10 | 173 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.5E-5 | 174 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016787 | Molecular Function | hydrolase activity | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MALRTYFNRE TLQFPISKTN TFHESMPEEV SAPNLNHFFP YSDESFFLSN PLFNNYFDPT 60 GDFVFPPEIY PPYDPIIPLT RHDIFPTHED YNLLPCPKSQ KYNYEPEPQE FITPSVPSTF 120 LEGFFMPYDN CSSLQGEEQQ HELFYNVPQH DTCVDLPWCE KKDKERNISP QSIAARERRR 180 KITVKTQQLG KLVPGGPKMN TAEMLHAAAK YVNYLQAQVG MLELMKSLEE EKTAPPSEIL 240 HDLVVSPVVQ EKLYTEEMCF VPKEIVTTLT NHEDVKSSPT IVEDLKQLIG TDIETKAK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_33809 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 5e-48 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020239928.1 | 0.0 | transcription factor bHLH52 | ||||
TrEMBL | A0A151RH83 | 0.0 | A0A151RH83_CAJCA; Transcription factor bHLH52 | ||||
STRING | GLYMA08G17747.1 | 1e-146 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3459 | 30 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30670.1 | 2e-30 | bHLH family protein |