PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_33548
Common NameKK1_037470
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family TALE
Protein Properties Length: 301aa    MW: 34805.3 Da    PI: 4.6521
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_33548genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.4e-092422762155
                    HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
       Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                    + +yp++ee+ +L++ +gL+++q+ +WF N+R ++
  C.cajan_33548 242 RWPYPTEEEKVQLSEMTGLDQKQINNWFINQRKRH 276
                    569*****************************885 PP
2ELK37.55.2e-13196217122
            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                    ELK++LlrKY+gyL+sL++EF+
  C.cajan_33548 196 ELKEMLLRKYGGYLCSLRKEFL 217
                    9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.4E-165397IPR005540KNOX1
PfamPF037907.5E-185596IPR005540KNOX1
SMARTSM012561.9E-25100151IPR005541KNOX2
PfamPF037916.9E-24103150IPR005541KNOX2
PfamPF037891.1E-8196217IPR005539ELK domain
SMARTSM011882.0E-6196217IPR005539ELK domain
PROSITE profilePS5121310.894196216IPR005539ELK domain
PROSITE profilePS5007113.102216279IPR001356Homeobox domain
SuperFamilySSF466893.29E-20218291IPR009057Homeodomain-like
SMARTSM003891.7E-13218283IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.4E-27221281IPR009057Homeodomain-like
CDDcd000862.16E-12228280No hitNo description
PfamPF059202.5E-17236275IPR008422Homeobox KN domain
PROSITE patternPS000270254277IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MEDFYKLNPL LSCPEDVVRE VNVNASATDA SELNIGLVAN NFLHLQEPQT SDRFIKNQIA  60
THPLYPNLVF AYIECRKVGA PPELVSILEE ISCESHSTDS LREIGDDPEL DEFMESYCEV  120
LHRYKQELSK PFNEATLFLC NIESQLSNLC NGTLTTPLDN NRSDEATGTS EDELSREKVE  180
IVEGYESSTS RLGDQELKEM LLRKYGGYLC SLRKEFLKKR KKSKLPKDAR MILMDWWNTH  240
YRWPYPTEEE KVQLSEMTGL DQKQINNWFI NQRKRHWKPS EDMRFAIMDG VSGSNIIGET  300
M
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211220LRKEFLKKRK
2217221KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00670PBMTransfer from GRMZM2G087741Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_33548
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020240454.10.0homeobox protein knotted-1-like 10
SwissprotQ9FP291e-96KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A151RF660.0A0A151RF66_CAJCA; Homeobox protein knotted-1-like 1
STRINGXP_007145002.11e-173(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.14e-78KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]