PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | C.cajan_31784 | ||||||||
Common Name | KK1_035063 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 241aa MW: 26899.4 Da PI: 9.1292 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.9 | 3.5e-20 | 84 | 133 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp + r++lg+f taeeAa+a++aa+ +++g C.cajan_31784 84 VYRGIRQRP-WGKWAAEIRDPH----KgVRVWLGTFPTAEEAARAYDAAATRIRG 133 69*******.**********72....35***********************9997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.97E-23 | 84 | 142 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-33 | 84 | 142 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.711 | 84 | 141 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-38 | 84 | 147 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.5E-14 | 84 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.2E-12 | 85 | 96 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.21E-19 | 85 | 143 | No hit | No description |
PRINTS | PR00367 | 7.2E-12 | 107 | 123 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 241 aa Download sequence Send to blast |
MCGGAIISDF IGVKRGRNLA AQDLWSELDP FADLLAFDTA TSKRQPPLPK IQHKNEVACE 60 KKKKKSVDVV AEKGKKSERA RKNVYRGIRQ RPWGKWAAEI RDPHKGVRVW LGTFPTAEEA 120 ARAYDAAATR IRGDKAKLNF PATPPPPSKK RCLAPDHSQQ SSSTSTTTTT TTTTTPPPDA 180 AIHGGDELDL KQLEWFLGLE NEQPLPNGGV EWNNNDNNNN YMVDDLWMLD DVVMPNRHLV 240 Y |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-22 | 80 | 141 | 1 | 63 | ATERF1 |
3gcc_A | 1e-22 | 80 | 141 | 1 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | C.cajan_31784 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020238523.1 | 0.0 | ethylene-responsive transcription factor ERF098 | ||||
Swissprot | P42736 | 1e-48 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A151RLP1 | 1e-179 | A0A151RLP1_CAJCA; Ethylene-responsive transcription factor RAP2-3 | ||||
STRING | XP_007138947.1 | 1e-106 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4892 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G16770.1 | 2e-35 | ethylene-responsive element binding protein |