PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | C.cajan_31387 | ||||||||
Common Name | KK1_033633 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
|
||||||||
Family | BBR-BPC | ||||||||
Protein Properties | Length: 238aa MW: 26374.8 Da PI: 8.8519 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 83.3 | 8.9e-26 | 1 | 115 | 1 | 104 |
GAGA_bind 1 mdddgsre..rnkg.yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllven 89 mdd g+re r+k+ +y++a + l +++ +q+m+++aerda+i+ernla+sekkaa+aerd+a+lqrd+a+aern+a++erdn++++l+++e+ C.cajan_31387 1 MDDAGHREngRHKAdQYKSAqgQWLMQHQpsMKQIMAIMAERDAAIQERNLAISEKKAAYAERDVALLQRDAAIAERNNAILERDNAIATLQYRET 96 9*****999*****9***655544444432146*************************************************************** PP GAGA_bind 90 sla....salpvgvqvlsg 104 sl+ ++p+g+q++++ C.cajan_31387 97 SLSsgsmPSCPPGCQISRD 115 *998887799999999876 PP | |||||||
2 | GAGA_bind | 264.3 | 6.8e-81 | 122 | 238 | 185 | 301 |
GAGA_bind 185 erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydls 280 ska++k +dl+ln+vs+Dest+P+PvCsCt +lrqCYkWGnGGWqSaCCttt+S+yPLP+++++r+aR++grKmS++af+klL++LaaeG+dls C.cajan_31387 122 AVSKADWKGQDLGLNQVSYDESTMPAPVCSCTSVLRQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLS 217 569********************************************************************************************* PP GAGA_bind 281 npvDLkdhWAkHGtnkfvtir 301 npvDLkdhWAkHGtn+++ti+ C.cajan_31387 218 NPVDLKDHWAKHGTNRYITIK 238 ********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 4.8E-14 | 1 | 96 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 3.0E-134 | 1 | 238 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 5.5E-77 | 118 | 238 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 238 aa Download sequence Send to blast |
MDDAGHRENG RHKADQYKSA QGQWLMQHQP SMKQIMAIMA ERDAAIQERN LAISEKKAAY 60 AERDVALLQR DAAIAERNNA ILERDNAIAT LQYRETSLSS GSMPSCPPGC QISRDDLNKQ 120 LAVSKADWKG QDLGLNQVSY DESTMPAPVC SCTSVLRQCY KWGNGGWQSA CCTTTLSMYP 180 LPAVPNKRHA RVGGRKMSGS AFNKLLSRLA AEGHDLSNPV DLKDHWAKHG TNRYITIK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | C.cajan_31387 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT093610 | 1e-165 | BT093610.1 Soybean clone JCVI-FLGm-24C8 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022037743.1 | 1e-119 | protein BASIC PENTACYSTEINE6 | ||||
Refseq | XP_022037744.1 | 1e-119 | protein BASIC PENTACYSTEINE6 | ||||
Refseq | XP_022037745.1 | 1e-119 | protein BASIC PENTACYSTEINE6 | ||||
Swissprot | Q8S8C6 | 2e-94 | BPC4_ARATH; Protein BASIC PENTACYSTEINE4 | ||||
TrEMBL | A0A151RQK4 | 1e-178 | A0A151RQK4_CAJCA; Uncharacterized protein | ||||
STRING | GSMUA_Achr1P03770_001 | 1e-115 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6905 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G21240.2 | 8e-92 | basic pentacysteine 4 |