PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_30491
Common NameKK1_033051
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 379aa    MW: 42678.6 Da    PI: 8.7216
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_30491genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.4e-16127172147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
    C.cajan_30491 127 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 172
                      899*****************************.***********996 PP
2Myb_DNA-binding55.81.1e-17179222146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
    C.cajan_30491 179 RRAFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 222
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.17122173IPR017930Myb domain
SMARTSM007172.9E-14126175IPR001005SANT/Myb domain
PfamPF002497.5E-16127172IPR001005SANT/Myb domain
SuperFamilySSF466896.36E-28127220IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-25128180IPR009057Homeodomain-like
CDDcd001673.57E-13130171No hitNo description
PROSITE profilePS5129426.929174228IPR017930Myb domain
SMARTSM007171.8E-14178226IPR001005SANT/Myb domain
PfamPF002492.1E-14179221IPR001005SANT/Myb domain
CDDcd001671.08E-11181221No hitNo description
Gene3DG3DSA:1.10.10.601.3E-20181227IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MAKSKCCMIS SQQSQNASSC YPFPSLSMMG SLSLASSNCA TLSNASSSQE SCGYASPNGR  60
STSWTFPFMR EFLSSNFEVC SDVVGVGESN SCDKIKQSAR FNEESNPNEN LVSGKEVDSG  120
NSKLCARGHW RPAEDSKLKE LVALYGPQNW NLIAEKLEGR SGKSCRLRWF NQLDPRINRR  180
AFSEEEEERL MQAHRIYGNK WAMIARLFPG RTDNAVKNHW HVIMARKYRE QSSAYRRRRM  240
SQSVYTRVEQ NPSFFGLNGY GEREAMSNTP RHVGMCAQQA PFDFFSVGRS NDMMGESTSQ  300
VRFRERTNES HNHNCQLSGF YPHYPQQHLT AMQQLDNNFY SVLKSSSAST TSTAKEPSSS  360
PYGVPLPPQF FDFLGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-341272277107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_30491
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-110AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020236745.20.0transcription factor MYB117
TrEMBLA0A151RSA10.0A0A151RSA1_CAJCA; Transcription factor MYB44
STRINGXP_007157609.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.18e-79myb domain protein 105