PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_29561

Common Name

KK1_027862

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

Trihelix

Protein Properties

Length: 318aa MW: 35967.1 Da PI: 4.9036

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_29561	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.9	4.1e-16	24	115	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +W+++ +L++a ++ +l+rg+l++++W++v++++ + ++ +r+ +qCk++++ ++k+yk +k++ ++ + +ss++p+fd+l+a C.cajan_29561 24 CWSEDASSTLVDAWGRRYLELNRGNLRQKHWQDVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKIEKARVSSSNGAVSSSWPFFDRLDA 115 7**************************************99999*************************999*********985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.0E-26	22	116	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MPDFHDSLAP PPPPSRPVPV REDCWSEDAS STLVDAWGRR YLELNRGNLR QKHWQDVADA 60 VNALHGHTKK THRTDVQCKN RIDTIKKKYK IEKARVSSSN GAVSSSWPFF DRLDALIGPN 120 FTAKKSSSSP SPSPPVALPL LPHRKNNPSP PAIAVPPTAV ALPQKRSAAA AMDEGYFRRN 180 YSAVAAAAAA AEADEEDDEE EEEEEEEPEE EEVEEEEDEG RGSEVEEGDK EREGMRRLAR 240 AIERFGEVYE RVEGQKLRQM VDLEKQRMQF AKDLEVQRMQ MFMDTQVQLE RIKRGKRSGS 300 NGEAQFLFTF VFPPFGFI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_29561

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020232320.1	0.0	trihelix transcription factor ASIL2
TrEMBL	A0A151S6E1	0.0	A0A151S6E1_CAJCA; Uncharacterized protein
STRING	GLYMA13G30280.1	1e-161	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1887	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	3e-36	sequence-specific DNA binding transcription factors