PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_29039 | ||||||||
Common Name | KK1_028408 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | bHLH | ||||||||
Protein Properties | Length: 149aa MW: 16511.1 Da PI: 9.4756 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.7 | 2.8e-05 | 38 | 77 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R ++i +++ L++l+ + +K + +++L++A++YI L C.cajan_29039 38 KERKEKIGERIVALQQLVSPY-----GKTDTSSVLKEAMDYIGFL 77 789999************999.....9***************887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.60E-5 | 26 | 82 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.6E-10 | 27 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.966 | 28 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.64E-12 | 29 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MDVRKMMEHK RSPCSVDQSS YTSIASKRQK ADLSISSKER KEKIGERIVA LQQLVSPYGK 60 TDTSSVLKEA MDYIGFLHKQ VKLLSAPYLE SSPAVKMQGM EPCSLRSRGL CLVPVSITMG 120 VAESNGADIW APIKTTTSPK FENDVSQFH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_29039 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031098 | 0.0 | KT031098.1 Glycine max clone HN_CCL_42 bHLH transcription factor (Glyma02g15520.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020232801.1 | 1e-107 | transcription factor bHLH153 isoform X1 | ||||
Swissprot | Q7XJU2 | 2e-58 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | A0A151S4T1 | 1e-106 | A0A151S4T1_CAJCA; Transcription factor bHLH113 family | ||||
STRING | GLYMA02G15520.1 | 1e-101 | (Glycine max) | ||||
STRING | GLYMA07G32980.1 | 1e-101 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10813 | 31 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05710.5 | 7e-61 | bHLH family protein |
Publications ? help Back to Top | |||
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