PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_28168 | ||||||||
Common Name | KK1_030779 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | WRKY | ||||||||
Protein Properties | Length: 248aa MW: 28445.6 Da PI: 4.9048 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.1 | 5e-30 | 47 | 105 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YY+C+++ gC++kk+ver+++d ++++itY+++Hnh+ C.cajan_28168 47 SDFWSWRKYGQKPIKGSPYPRGYYKCSTSkGCSAKKQVERCRTDASMLIITYTSTHNHP 105 699***********************9988****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-31 | 39 | 107 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.869 | 41 | 107 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.89E-26 | 44 | 107 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.2E-35 | 46 | 106 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.5E-25 | 48 | 105 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MDSNTKASPQ PDSESQTSKK RKMVEKTVVA VRIGENVGKL KNEGLPSDFW SWRKYGQKPI 60 KGSPYPRGYY KCSTSKGCSA KKQVERCRTD ASMLIITYTS THNHPCPTTT NSPQQPKESE 120 SKTIQDVSPT PKEEDQEKIE EQENNNKTND EITNEETFQY LQSPIRCSQD IIIEQEDPFK 180 LNTEKSHDRM DLLLEEEPLC YAQFKNLSAS KNEELDFFDE LEELPMSSSF LHFTRSIFSD 240 ERIPVAPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 7e-22 | 47 | 108 | 17 | 80 | Disease resistance protein RRS1 |
5w3x_D | 7e-22 | 47 | 108 | 17 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_28168 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU019556 | 0.0 | EU019556.1 Glycine max WRKY8 (WRKY8) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020234857.1 | 0.0 | probable WRKY transcription factor 65 | ||||
TrEMBL | A0A151RYF8 | 0.0 | A0A151RYF8_CAJCA; Putative WRKY transcription factor 35 | ||||
STRING | GLYMA19G40470.1 | 1e-156 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9708 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 9e-37 | WRKY DNA-binding protein 35 |