PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_24755

Common Name

KK1_026228

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

NAC

Protein Properties

Length: 321aa MW: 35980.4 Da PI: 7.0956

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_24755	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107.4	1.7e-33	63	204	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgy 82 lp+G++F+P+d+e++ e+L++kv+++ ++l+ +++ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ + + C.cajan_24755 63 LPAGVKFDPNDQEIL-EHLEAKVKSDACKLHPlidefipTLEGEnGICYTHPEKLP-GVSKDGQIRHFFHRPSKAYTTGTRKRRKVHtddegsETR 156 799*********9.99*****5553333333222333336******.555666777**************744456555788 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 W++tgk+++vl+ + ++g kk+Lv+y gr++k+ekt+Wvmh+y+l C.cajan_24755 157 WHKTGKTRAVLAGGAVVKGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 204 ********99999******6658*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.05E-35	58	223	IPR003441	NAC domain
PROSITE profile	PS51005	32.83	63	223	IPR003441	NAC domain
Pfam	PF02365	4.1E-15	64	204	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MTWCNDSDEE RGFESITPTM TVTPNTDDAP IKLTEEIRTI TCPSCAHNID FKDQGGIHDL 60 PGLPAGVKFD PNDQEILEHL EAKVKSDACK LHPLIDEFIP TLEGENGICY THPEKLPGVS 120 KDGQIRHFFH RPSKAYTTGT RKRRKVHTDD EGSETRWHKT GKTRAVLAGG AVVKGFKKIL 180 VLYTNYGRQK KPEKTNWVMH QYHLGSSEEE KDGELVVSKV FYQTQPRQSG GSIIIKDPYE 240 KILNDGSSHG HNTIPKTASL VDCYNAPYIN YDHVHVSHNN RENSPQLIIP SSVVQVDGTY 300 SIRLAMDANK ARLESNTGKS F

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00459	DAP	Transfer from AT4G28500	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_24755

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031220	0.0	KT031220.1 Glycine max clone HN_CCL_58 NAC transcription factor (Glyma15g08480.4) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020230865.1	0.0	NAC domain-containing protein 73
Swissprot	O49459	1e-124	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A151SAN6	0.0	A0A151SAN6_CAJCA; NAC domain-containing protein 8
STRING	GLYMA13G30800.4	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1228	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-126	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]