PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_24660
Common NameKK1_025022
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 337aa    MW: 37564.1 Da    PI: 6.3014
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_24660genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92.1e-14155201354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  C.cajan_24660 155 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 201
                    79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-12155201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-14156208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-14156210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-13158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.40E-5165204No hitNo description
CDDcd048731.22E-7238313No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MIQEDQGQCS SQAINNYHQA YQEHLLLQQQ QMQQQNNDIY GGGLNMYHGE VSPILHQPWS  60
MPHQVVHHHH PLNPVREHDP FLVPPQPSPY ATLFNRRGPS LQFAYDGSSS DHLRIISDTL  120
GPVVQPGQAP FGLQTELAKM TAQEIMEAKA LAASKSHSEA ERRRRERINN HLAKLRSLLP  180
STTKTDKASL LAEVIQHVKE LKRQTSLIAE SSPVPTESDE LTVEDEADED GNSVIKASLC  240
CEDRSDLFPE LIKTLKALRL RTLKAEITTL GGRVKNVLFI TGEEADSSSG SEDHSHQQQY  300
CISSIQEALK AVMEKSVGDE SASANIKRQR TNIISMS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160165ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_24660
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0958850.0BT095885.1 Soybean clone JCVI-FLGm-20E1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020229729.10.0transcription factor bHLH30
SwissprotQ9S7Y11e-101BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A151SE230.0A0A151SE23_CAJCA; Transcription factor bHLH30
STRINGXP_007143790.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.14e-85bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]