PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | C.cajan_24081 | ||||||||
Common Name | KK1_025445 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 161aa MW: 18385.1 Da PI: 4.4012 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.1 | 7.1e-12 | 6 | 49 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+W++++ l+++av++lG++ ++ I + ++ g+t+ q+k+++ k C.cajan_24081 6 RGKWSKQDTGLFYEAVRELGTD-FSMIQQLFP-GKTRHQIKLKYKK 49 89********************.*********.***********87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.306 | 1 | 55 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-7 | 3 | 49 | IPR009057 | Homeodomain-like |
Pfam | PF15963 | 2.6E-27 | 3 | 83 | No hit | No description |
SMART | SM00717 | 4.7E-8 | 5 | 53 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.28E-11 | 7 | 55 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.51E-6 | 8 | 49 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 161 aa Download sequence Send to blast |
MEKAPRGKWS KQDTGLFYEA VRELGTDFSM IQQLFPGKTR HQIKLKYKKE ERENPSLLTD 60 AVNNRAKDHS HYKLLIERLQ DASNKAEVDP SRDASDFMAV DEVLDLTPAT NNEEAAEVAT 120 TKQEDDVKAQ EDSVAVPSPE QSDDSDDDFQ KWSQYKSVFD E |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | C.cajan_24081 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020230168.1 | 1e-109 | uncharacterized protein LOC109810960 isoform X5 | ||||
Refseq | XP_029129722.1 | 1e-109 | uncharacterized protein LOC109810960 isoform X4 | ||||
TrEMBL | A0A151SD13 | 1e-114 | A0A151SD13_CAJCA; Transcription factor TFIIIB component B | ||||
STRING | GLYMA01G43821.1 | 2e-71 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3666 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G39160.2 | 5e-26 | MYB_related family protein |