PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_22707 | ||||||||
Common Name | KK1_023379 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | bHLH | ||||||||
Protein Properties | Length: 479aa MW: 52907.8 Da PI: 7.1347 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.6 | 7e-06 | 370 | 408 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L C.cajan_22707 370 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 408 5778999**********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.576 | 359 | 408 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-11 | 369 | 426 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.83E-7 | 369 | 412 | No hit | No description |
SMART | SM00353 | 0.0049 | 370 | 414 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-9 | 373 | 416 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence Send to blast |
MSDDQFQASG NWWESARNVK FESGESQSSS SGLTNMGNYG WQNHDMARSS SVDNSASGGS 60 TVVFHDQKQL QLQHQHHQHH HHHHHDSATS TNDPNLHMMG LGLSSQAMDW NQASLQLRGE 120 KGSDNSFRSM LQENLSSPGS SFQQESGNNN NIGLSHHHHQ QVHWRPEKLF SAESSSNDQF 180 KRGFSLDQTQ FSSPQYSSGD STVTSQGLPC SFQMDYVGNP SSILQGLLGQ ESNNSSNNNN 240 NQPHQGAGAM NFPYSATTYG LNSNIELVPS WSKVPQFLRA SPPKQQPNNQ LHFTNNAPFW 300 NANSDPAIKD ARSSFIPSLQ PPFSTSNFDV QSKNICDVRD SGGVVKKSGG EPAPKRPRNE 360 TPSPLPAFKV RKEKMGDRIT ALQQLVSPFG KTDTASVLSE AIEYIKFLHE QVTVLSTPYM 420 KSGAPIQHQQ SSGKSKESEG PKQDLRSRGL CLVPVSSTFP VTNEQPFEFW NPTYGGTYR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_22707 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020222620.1 | 0.0 | transcription factor bHLH123 | ||||
TrEMBL | A0A151T1M6 | 0.0 | A0A151T1M6_CAJCA; Transcription factor bHLH123 family | ||||
STRING | XP_007133119.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1118 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 6e-77 | bHLH family protein |