PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_21957 | ||||||||
Common Name | KK1_022609 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB | ||||||||
Protein Properties | Length: 243aa MW: 28478.3 Da PI: 10.3226 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.3e-17 | 23 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+++Ed lv++vk++G + W+ Iar ++ gR +kqc++rw+++l C.cajan_21957 23 KGQWSADEDRVLVQLVKRFGLKKWSQIARLLN-GRIGKQCRERWHNHL 69 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 59.2 | 8.9e-19 | 75 | 117 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W++eEd+ l++a+k+lG++ W+ Iar+m+ gR+++ +k++w+ C.cajan_21957 75 KESWSEEEDKVLIEAHKELGNK-WAEIARRMP-GRSENTIKNHWN 117 578*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.807 | 18 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.95E-31 | 20 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-15 | 22 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-25 | 24 | 75 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 2.8E-18 | 26 | 84 | No hit | No description |
CDD | cd00167 | 1.01E-12 | 26 | 69 | No hit | No description |
PROSITE profile | PS51294 | 20.962 | 74 | 124 | IPR017930 | Myb domain |
SMART | SM00717 | 4.2E-16 | 74 | 122 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-21 | 76 | 122 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.58E-12 | 77 | 120 | No hit | No description |
Gene3D | G3DSA:3.30.1890.10 | 4.2E-4 | 131 | 168 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MNNQVQRRSI TVKFQNQISN IIKGQWSADE DRVLVQLVKR FGLKKWSQIA RLLNGRIGKQ 60 CRERWHNHLR PNIRKESWSE EEDKVLIEAH KELGNKWAEI ARRMPGRSEN TIKNHWNATK 120 RRLYARKQRI KRTTSKGATT LLQSYIRQVT EAENNHLNKP INNNLHQRPY RVRYESSEGG 180 FTSEEEEPAW HRHLPVANDD YVPVMLTSEE MATASAVEAG AVDYGVAMEK EMDLMEMIYR 240 KAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-45 | 18 | 122 | 2 | 106 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_21957 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020215152.1 | 1e-178 | transcription factor MYB118 | ||||
Swissprot | Q9S7L2 | 9e-60 | MYB98_ARATH; Transcription factor MYB98 | ||||
TrEMBL | A0A151TPJ2 | 0.0 | A0A151TPJ2_CAJCA; Transcription factor MYB98 | ||||
STRING | XP_007140966.1 | 1e-103 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1570 | 31 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 5e-62 | myb domain protein 98 |
Publications ? help Back to Top | |||
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