PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_19423 | ||||||||
Common Name | KK1_019990 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 306aa MW: 34403.7 Da PI: 6.8475 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.5 | 3.1e-07 | 143 | 164 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H C.cajan_19423 143 FCEICGKGFRRDANLRMHMRAH 164 6*******************99 PP | |||||||
2 | zf-C2H2 | 10.7 | 0.0017 | 191 | 214 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C k+Fs +L++H + + C.cajan_19423 191 YTCELCRtKRFSVLADLRSHVKHC 214 9*******************9976 PP | |||||||
3 | zf-C2H2 | 12.3 | 0.00052 | 222 | 237 | 5 | 20 |
TTTEEESSHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHi 20 Cg++Fsrk+ L +H C.cajan_19423 222 TCGTTFSRKDKLFSHV 237 6**************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.8E-6 | 139 | 165 | No hit | No description |
SMART | SM00355 | 0.0017 | 142 | 164 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.321 | 142 | 169 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.3E-6 | 142 | 169 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12874 | 0.0048 | 143 | 162 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 144 | 164 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 13 | 191 | 213 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.7E-4 | 213 | 238 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 250 | 219 | 243 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0090502 | Biological Process | RNA phosphodiester bond hydrolysis, endonucleolytic | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0004526 | Molecular Function | ribonuclease P activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MSNPNSNTNE DPTPTIHSGD PNTTADPQVP LRNLSLLRTK MDSLHHFLSQ SINTSAPLTV 60 HQIATVSNHI VNAIHQTIVN AAAIVSYSRN STAAVAPSYP KKLNADKHKL EHPEDDDAAE 120 AFDGDFEIVE LDAVELLAEH IHFCEICGKG FRRDANLRMH MRAHGERRFR SLRSVACVKN 180 HFKRSHCPKM YTCELCRTKR FSVLADLRSH VKHCGEDRWK CTCGTTFSRK DKLFSHVALF 240 EGHAPALACD KGKQVVDDHH RMGISESDEL GNRFEVEELP EGFFQDFGSI DDYCLREVLG 300 FPSNLT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_19423 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020201817.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | A0A151U8X6 | 0.0 | A0A151U8X6_CAJCA; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
STRING | XP_007163652.1 | 1e-133 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6855 | 31 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.3 | 2e-53 | C2H2 family protein |