PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_17814 | ||||||||
Common Name | KK1_018340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | NAC | ||||||||
Protein Properties | Length: 410aa MW: 46551.8 Da PI: 7.0396 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 185.6 | 1.2e-57 | 16 | 143 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdee++++yL++kv+++ +++ +i e+d++k+ePwdLpkk+k +ekewyfF+++d+ky+tg r+nrat+sgyWkatgkdke+++ k C.cajan_17814 16 LPPGFRFHPTDEEIISYYLTEKVKNSGFSA-IAIGEADLNKCEPWDLPKKAKIGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIYKGK 110 79*************************999.88***************99999******************************************* PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 g+lvg+kktLvfykgrapkgekt+Wvmhe+rle C.cajan_17814 111 GNLVGMKKTLVFYKGRAPKGEKTNWVMHEFRLE 143 ******************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-61 | 13 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.468 | 16 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-29 | 17 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MEEPIVLNKG EEPLDLPPGF RFHPTDEEII SYYLTEKVKN SGFSAIAIGE ADLNKCEPWD 60 LPKKAKIGEK EWYFFCQKDR KYPTGMRTNR ATESGYWKAT GKDKEIYKGK GNLVGMKKTL 120 VFYKGRAPKG EKTNWVMHEF RLEGKFASYS LPKAAKDEWV VSRVFHKNTD LRKTSIPGLL 180 RINSLGDDLL DYSSLPPLMD PTYVNTNANT NHTTTNPLSS NKSQSDGYYL PSFSINSNHH 240 HHLLMKPQDH HQRTYEIPTI NYTSNSNQAN LSNNVNPMGN NTLSQPLNMF NDYYMHQNRI 300 KSSIMPSVAT GFGNNNNNNH DQAILRALSA KNNDHLGELE KQCKMEQFSS NHSQDTGLSN 360 DRNTDTSSVV SKQDNNNNNM GGNRALYEDF EGPSSVAPLS DLECLQWEDY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-51 | 14 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-51 | 14 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-51 | 14 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-51 | 14 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-51 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-51 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-51 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-51 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-51 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-51 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-51 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-51 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-51 | 14 | 173 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-51 | 14 | 173 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_17814 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031270 | 0.0 | KT031270.1 Glycine max clone HN_CCL_56 NAC transcription factor (Glyma16g04720.1_like1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020219836.1 | 0.0 | NAC domain-containing protein 87 | ||||
Swissprot | Q9FK44 | 1e-112 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | A0A151T9N3 | 0.0 | A0A151T9N3_CAJCA; Protein CUP-SHAPED COTYLEDON 2 | ||||
STRING | XP_007161814.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF409 | 34 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.1 | 1e-102 | Arabidopsis NAC domain containing protein 87 |
Publications ? help Back to Top | |||
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