PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_17723
Common NameKK1_018246
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family NF-YA
Protein Properties Length: 350aa    MW: 38539 Da    PI: 9.8714
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_17723genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.31.1e-32183239158
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                    +ep+YVNaKQy++Il+RRq Rakle+++kl +k+rkpylheSRh hAl+R+RgsgGrF
  C.cajan_17723 183 EEPIYVNAKQYHAILRRRQYRAKLEAQNKL-IKERKPYLHESRHLHALKRARGSGGRF 239
                    69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005218.6E-38181242IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.161182242IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.6E-27184239IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.0E-24185207IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860187207IPR018362CCAAT-binding factor, conserved site
PRINTSPR006166.0E-24216239IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MKNLWEKDSS STHLTSPYVL GRSSWGTSSD SDVQQSSMSK SLTLKMGVFP QQYRNTKSLS  60
FQYQDRDSSS TQSTDQSYPE VASAQSGQIS VRCSNSSVCS TLNTTGVKSV ESVIRSSMGS  120
QDFTFTPSQL GHNQSLTHAA FHFAEPCFGG LLPAAYGPQP NVHHAQLVGM APVRIPLPLD  180
LSEEPIYVNA KQYHAILRRR QYRAKLEAQN KLIKERKPYL HESRHLHALK RARGSGGRFL  240
NTKKLQESKL TLANRGLDVS SRTQLNLGGN MSETKVHQVK NLNYRDGVST TTCSDVTSAS  300
NSDGVFQQHE SDFRLCGYPS HIGRNMQGYS ADISGCGGGS GNRHRLSVLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-22183244263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_17723
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020219207.10.0nuclear transcription factor Y subunit A-3 isoform X1
RefseqXP_020219208.10.0nuclear transcription factor Y subunit A-3 isoform X1
TrEMBLA0A151T9E00.0A0A151T9E0_CAJCA; Nuclear transcription factor Y subunit A-3
STRINGGLYMA07G04050.50.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101202541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-71nuclear factor Y, subunit A3