PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_16563

Common Name

KK1_017047

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

WRKY

Protein Properties

Length: 269aa MW: 29968.2 Da PI: 6.995

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_16563	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.8	1.1e-33	129	187	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCtsa C vkk+vers+edp++v++tYeg+H+h+ C.cajan_16563 129 LDDGYKWRKYGQKAVKNSPYPRSYYRCTSAACGVKKRVERSSEDPSIVVTTYEGTHTHP 187 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.0E-35	114	189	IPR003657	WRKY domain
SuperFamily	SSF118290	9.81E-30	121	189	IPR003657	WRKY domain
PROSITE profile	PS50811	32.156	124	189	IPR003657	WRKY domain
SMART	SM00774	5.9E-39	129	188	IPR003657	WRKY domain
Pfam	PF03106	2.8E-27	130	187	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MDLLAVHDYN APLFDWLPCA ADHDHVFHHH APSPDVPDSS EVLNTPPSPN LSSISSSSNE 60 ATATVSNNVE QHSGKPPNIE QAEEEGGNGV RDEQDQDKTD KQVKPKKKKQ KKQREARFAF 120 MTKSEIDHLD DGYKWRKYGQ KAVKNSPYPR SYYRCTSAAC GVKKRVERSS EDPSIVVTTY 180 EGTHTHPCPA SSRATFAFLP HPPPTAASFA SPHFLLPPHH QPSPFSSTTN YINTTSFAHL 240 GHDPLSRDHG LLQDIIVPTN LRKEEKDSM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-29	119	190	7	78	Probable WRKY transcription factor 4
2lex_A	2e-29	119	190	7	78	Probable WRKY transcription factor 4
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	111	KPKKKKQKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_16563

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU019568	4e-88	EU019568.1 Glycine max WRKY26 (WRKY26) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020221367.1	0.0	probable WRKY transcription factor 48
Swissprot	Q9FGZ4	8e-51	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	A0A151T658	0.0	A0A151T658_CAJCA; Putative WRKY transcription factor 48
STRING	GLYMA09G03900.1	7e-96	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1002	34	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	2e-52	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]