PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_16266 | ||||||||
Common Name | KK1_016742 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | NF-YA | ||||||||
Protein Properties | Length: 223aa MW: 24232.1 Da PI: 9.2777 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 105.4 | 5e-33 | 70 | 126 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq+Rakle+++kl +ksrkpylheSRh+hAl+R RgsgGrF C.cajan_16266 70 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-IKSRKPYLHESRHRHALNRVRGSGGRF 126 57****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 5.0E-37 | 68 | 129 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.857 | 69 | 129 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.9E-28 | 72 | 126 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 8.0E-25 | 72 | 94 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 74 | 94 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 8.0E-25 | 103 | 126 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MKPFLCLNLS DTEFNCSQVD CNHSMAHASY PYGDPFFSYG PQFTSQPQIL PQMLGLSSAR 60 VALPLDLTED GPIYVNAKQY HGILRRRQSR AKLEAQNKLI KSRKPYLHES RHRHALNRVR 120 GSGGRFLSTK QLPQSNAEYV TGAHSGSDPT NNPSEGESHS SKAGDNASSI TSCSDRPCLS 180 GNSVNFRQPE CIFLGNSANM GGAPPCSGGL TFGGTKQRAS VVR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 3e-23 | 70 | 131 | 2 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_16266 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT099370 | 0.0 | BT099370.1 Soybean clone JCVI-FLGm-13B20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020222017.1 | 1e-166 | nuclear transcription factor Y subunit A-7 | ||||
Swissprot | Q93ZH2 | 1e-39 | NFYA3_ARATH; Nuclear transcription factor Y subunit A-3 | ||||
TrEMBL | A0A151T593 | 1e-164 | A0A151T593_CAJCA; Nuclear transcription factor Y subunit A-3 | ||||
STRING | GLYMA15G18970.1 | 1e-136 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6949 | 31 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 6e-42 | nuclear factor Y, subunit A3 |