PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_15737 | ||||||||
Common Name | KK1_016199 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | NAC | ||||||||
Protein Properties | Length: 238aa MW: 27466.8 Da PI: 4.622 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 175.5 | 1.5e-54 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeelv++yLk+k++++++el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v + C.cajan_15737 6 LPPGFRFHPTDEELVNYYLKRKINAQEIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVSC 100 79****************************.99**************84335556888************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g+kktLv+ykgrap+g +tdWvmheyrl C.cajan_15737 101 -QSRPIGMKKTLVYYKGRAPQGIRTDWVMHEYRL 133 .999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.23E-63 | 4 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.315 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.1E-30 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MSPVGLPPGF RFHPTDEELV NYYLKRKINA QEIELDIIPE VDLYKCEPWE LAEKSFLPSR 60 DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVSC QSRPIGMKKT LVYYKGRAPQ 120 GIRTDWVMHE YRLDDKECED TTGLQDTYAL CRVFKKNGIC SDIEEQQGQC SISLIECSQT 180 IINECETMSP DIPGASSSCL EEEDKDDSWM QFITDDAWYS SNAAMIGGEE VSHVTFTN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-54 | 4 | 156 | 13 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00363 | DAP | Transfer from AT3G17730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_15737 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 1e-114 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020221872.1 | 1e-180 | NAC domain-containing protein 86 | ||||
Swissprot | Q9FFI5 | 1e-88 | NAC86_ARATH; NAC domain-containing protein 86 | ||||
TrEMBL | A0A151T3V1 | 1e-179 | A0A151T3V1_CAJCA; NAC domain-containing protein 78 | ||||
STRING | GLYMA09G29760.2 | 1e-173 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9564 | 33 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17730.1 | 1e-134 | NAC domain containing protein 57 |
Publications ? help Back to Top | |||
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