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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_15557 | ||||||||
Common Name | KK1_016006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | ARR-B | ||||||||
Protein Properties | Length: 257aa MW: 28972.9 Da PI: 5.3417 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 75.7 | 6e-24 | 191 | 240 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 +pr+ Wtp+LH+ Fv+av+q+ G +kA+Pk+ile+m+++gLt+e+++SHLQ C.cajan_15557 191 RPRVIWTPNLHRDFVKAVKQI-GDDKAVPKKILEVMNIPGLTRENIASHLQ 240 59*******************.9**************************** PP | |||||||
2 | Response_reg | 59.6 | 1.7e-20 | 17 | 123 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 vl +d +p+v+e ++q++ +y ++ ++++ al+l++e+ +D+il+ + mp+mdG+e+l++ ++ ++p+iv++a ++++ + +a+ Ga C.cajan_15557 17 VLAIDTDPTVLEFIKQICVGLQY-QIIICTESLFALNLVRESSgsVDVILMELHMPDMDGHEFLQHVKK---DIPVIVMSADDAKSSIMKAVANGA 108 7899*******************.8888999999*****999999**********************99...78********************** PP SEEEESS--HHHHHH CS Response_reg 95 kdflsKpfdpeelvk 109 d+ Kp ++++l + C.cajan_15557 109 CDYWIKPLQENQLKN 123 ***********9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 2.4E-29 | 14 | 144 | No hit | No description |
SuperFamily | SSF52172 | 2.13E-27 | 14 | 137 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 1.8E-20 | 15 | 125 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 33.881 | 16 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.3E-17 | 17 | 123 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.86E-20 | 18 | 129 | No hit | No description |
SuperFamily | SSF46689 | 2.87E-15 | 189 | 244 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.4E-23 | 190 | 240 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.1E-22 | 192 | 244 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-5 | 196 | 240 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MAEIPSEASQ FSASLRVLAI DTDPTVLEFI KQICVGLQYQ IIICTESLFA LNLVRESSGS 60 VDVILMELHM PDMDGHEFLQ HVKKDIPVIV MSADDAKSSI MKAVANGACD YWIKPLQENQ 120 LKNIWTHAAR KVLTENNFGR LEDDDSRKRD KDNSEFGSST DNDVTGGVAS SSREPDEVDE 180 SDNSHQPPAK RPRVIWTPNL HRDFVKAVKQ IGDDKAVPKK ILEVMNIPGL TRENIASHLQ 240 VIFCFHVHLI FHNWTWL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 2e-16 | 191 | 240 | 1 | 50 | Transcription factor LUX |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_15557 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020220449.1 | 1e-135 | two-component response regulator ORR21 | ||||
TrEMBL | A0A151T391 | 0.0 | A0A151T391_CAJCA; Two-component response regulator ARR2 | ||||
STRING | GLYMA08G05165.1 | 4e-87 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14524 | 5 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 3e-59 | response regulator 2 |