PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_14079 | ||||||||
Common Name | KK1_014503 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB | ||||||||
Protein Properties | Length: 332aa MW: 37743.4 Da PI: 7.2366 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.1 | 6.5e-16 | 13 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.........kgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G ++W+++++ g + R++k+c++rw +yl C.cajan_14079 13 RGLWSPEEDEKLIRYINTHGHKSWSSVPKFAGrlfsiiyvcLQRCGKSCRLRWINYL 69 788****************************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.5 | 1.3e-17 | 75 | 118 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eE+++++d ++ lG++ W+ Ia++++ gRt++++k++w++ C.cajan_14079 75 RGSFTAEEEQIIIDIHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 118 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.6E-25 | 5 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.472 | 8 | 69 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.66E-28 | 10 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-12 | 12 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-15 | 13 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.06E-10 | 16 | 69 | No hit | No description |
PROSITE profile | PS51294 | 26.468 | 70 | 124 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-26 | 73 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-16 | 74 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-16 | 75 | 118 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.63E-12 | 77 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MGHRCCSKQK IKRGLWSPEE DEKLIRYINT HGHKSWSSVP KFAGRLFSII YVCLQRCGKS 60 CRLRWINYLR PDLKRGSFTA EEEQIIIDIH RILGNRWAQI AKHLPGRTDN EVKNFWNSCI 120 KKKLISQGLD PQTHTLLSSH RRSSACTISN IHQNSNSIFI VSSNIPNAPV ETTSQTFSSL 180 PKAQPNIVQT PSSIVSSEYQ TSTILSNKFS SDLPYELLLE NTSNICSPSY MNPEAVELSN 240 YENNVNWVSR VNVEDFSAQT PEEGTQVQVH QEKNKTCESK GIDVREVNNK GNLETSASFE 300 SSNFDFGLLE SVLTSEFISH DFNCMDELAW NF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-31 | 13 | 124 | 7 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00350 | DAP | Transfer from AT3G12720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_14079 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020223087.1 | 0.0 | transcription factor MYB86 | ||||
TrEMBL | A0A151SWA9 | 0.0 | A0A151SWA9_CAJCA; Transcription factor MYB86 | ||||
STRING | XP_007149171.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3466 | 32 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 6e-86 | myb domain protein 67 |