PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_13224

Common Name

KK1_013633

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

LBD

Protein Properties

Length: 272aa MW: 29277.6 Da PI: 8.484

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_13224	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.7	1.4e-31	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q++ C.cajan_13224 4 SCNGCRVLRKGCTQDCSIRPCLqwiknPESQANATVFLAKFYGRAGLINLVNAGPQHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAA 99 6********************************************************************************************* PP DUF260 92 aelallkee 100 +e++l +e+ C.cajan_13224 100 VEAVLKGEP 108 9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.653	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-25	4	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MRMSCNGCRV LRKGCTQDCS IRPCLQWIKN PESQANATVF LAKFYGRAGL INLVNAGPQH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGEPIT PITSEAAANG 120 QAPPLKPYDI RHVSKDESPA NETKRVKTRS KRAAGSLIKP KASKGTRFAA TEPETASHES 180 GLSHLSEAAA AMMVEGESKE SESVVSAETS NLFRDEAEAV EAGGRTGEVG LELTLGLEPV 240 SRACHVVPVK KRRIELGEKL ACKMELGLEY SA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_13224

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020217488.1	0.0	LOB domain-containing protein 41
Swissprot	Q9M886	1e-110	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A151TJT7	0.0	A0A151TJT7_CAJCA; LOB domain-containing protein 41
STRING	GLYMA13G07590.1	1e-152	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	5e-98	LOB domain-containing protein 41