PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | C.cajan_12990 | ||||||||
Common Name | KK1_013391 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 281aa MW: 31390.7 Da PI: 9.5214 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.1 | 1.2e-11 | 97 | 143 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR++i + f L l+P + kK++Ka++L A++++k+Lq C.cajan_12990 97 DHIIAERKRREKISQQFIALSALIPGL-----KKMDKASVLGDAIKHVKELQ 143 599************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.869 | 93 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-16 | 97 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.89E-17 | 98 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-9 | 98 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.46E-11 | 98 | 147 | No hit | No description |
SMART | SM00353 | 6.9E-14 | 99 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 281 aa Download sequence Send to blast |
MSNSSQDDKN KIFGESPANT LKTGTSNSAN TEYLSQKNDS SLSYILSFDN VVNPAPVLNI 60 DSTTMKPKDG KVARNQNKEP KNNNSVSLSR SPLHARDHII AERKRREKIS QQFIALSALI 120 PGLKKMDKAS VLGDAIKHVK ELQEQVKLLE EQNKRKRVES MVYVEKSKLS WDEDVSDTSS 180 NSGDGNSYGP SKTNASSLPE VEARVSEKHV LIRIHCDKQR GLFMNILKEV ENLHLSVMNS 240 SILLFGTSKL DITIVAEMEQ EFGLSVKELA RNLRVGLMQF M |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 101 | 106 | ERKRRE |
2 | 102 | 107 | RKRREK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | C.cajan_12990 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP010277 | 9e-37 | AP010277.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjB71C07, BM2029, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020217421.1 | 0.0 | transcription factor bHLH18 | ||||
Swissprot | Q9T072 | 3e-59 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | A0A151TJ50 | 0.0 | A0A151TJ50_CAJCA; Transcription factor bHLH25 | ||||
STRING | GLYMA01G40611.1 | 1e-132 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF455 | 34 | 164 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37850.1 | 3e-50 | bHLH family protein |