PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_12303
Common NameKK1_012677
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 292aa    MW: 33002.3 Da    PI: 4.4921
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_12303genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.9e-12125168654
                    HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
            HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  C.cajan_12303 125 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 168
                    589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-15122179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9125168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.70E-4126172No hitNo description
Gene3DG3DSA:4.10.280.108.9E-15126181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.32E-4218259No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MELSQLGFLD ELLAPRKDTW SALSSGLNEL LPSGWSFDSF DDNQELDSSY TRNDESVPLL  60
PQEDNPSLED EEFGFLGSDN QSLEQATNGC KIEEQVTEIP VFNMGMCGEK KPKSKKLEGQ  120
PSKNLMAERR RRKRLNDRLS MLRSIVPKIS KMDRTSILGD TIDYMKELLE RIGKLQEEEM  180
EEGTNQINLL GISKELKPNE VMVRNSPKFD VERRDQDTRI SICCATKPGL LLSTVNTLEA  240
LGLEIHQCVI SSFNDFSMQA SCSEVSEQRN CMSPEEIKQA LFRNAGYGGR CL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127134ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_12303
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310970.0KT031097.1 Glycine max clone HN_CCL_167 bHLH transcription factor (Glyma01g02390.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020217218.10.0transcription factor bHLH93 isoform X1
SwissprotQ9LSL15e-89BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A151THB90.0A0A151THB9_CAJCA; Transcription factor bHLH93
STRINGGLYMA01G02390.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.14e-91beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]