PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_11925 | ||||||||
Common Name | KK1_012289 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | B3 | ||||||||
Protein Properties | Length: 423aa MW: 48163.9 Da PI: 9.5999 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.6 | 7.1e-16 | 6 | 96 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f k l+ps + ++l+lp +f++++gg+ s +tl ++g +W+v l +k +++y++ +GW+eF + + +g +vF ++g+s+f +v++f+ C.cajan_11925 6 FHKLLLPSTL-QPNQLRLPDNFMRKYGGE--ISPIVTLSVPDGSVWRVGL--KKADNKYWFIDGWQEFIQRYAIGVGYLLVFGFEGKSSF--NVRIFN 96 5566655555.5566***********877..6668***************..********************************999999..888875 PP | |||||||
2 | B3 | 56.2 | 6.1e-18 | 293 | 383 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 vl ps+ + ++++lp fae+h +g++ ++l+ ++gr+W v++ yr+++ l++GW eF +n+L egD++vF+l + +e l v+vfr C.cajan_11925 293 VLRPSYLYRGCIMYLPSCFAEKHlNGVSG---FIKLQISTGRQWPVRCLYRGGR--AKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLQVTVFR 383 78899******************877743...5***************665555..66***********************998888889999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.12E-22 | 2 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-22 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.13E-17 | 4 | 96 | No hit | No description |
PROSITE profile | PS50863 | 12.605 | 5 | 98 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.4E-15 | 6 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.4E-13 | 6 | 95 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.9E-24 | 282 | 383 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-24 | 283 | 384 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.24E-22 | 288 | 383 | No hit | No description |
SMART | SM01019 | 4.3E-15 | 290 | 385 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.62 | 290 | 385 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-15 | 293 | 383 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MPHPSFHKLL LPSTLQPNQL RLPDNFMRKY GGEISPIVTL SVPDGSVWRV GLKKADNKYW 60 FIDGWQEFIQ RYAIGVGYLL VFGFEGKSSF NVRIFNLATS EINYQSATRS SNEGPYFANR 120 VKIFEEMEDE DSIEILDSSP SHLASQNKAL AGSVDKMTPG KSYTPALQNL FNGSKLNSIN 180 WGEGGNAHSL RSASDNRMTR DIGVQFNAVE FKRSTEELKL RASIEERIKK TARKKRKSEG 240 QDPSAEHEEE VEMRFRFYES ASARKRTATA EERERAINMA KAFEPPNPFC RVVLRPSYLY 300 RGCIMYLPSC FAEKHLNGVS GFIKLQISTG RQWPVRCLYR GGRAKLSQGW FEFSLENNLG 360 EGDVCVFELL RMKEVVLQVT VFRITEDVGL LSPPLQQNQN MNTPKLLNNP LQQHLTSTKL 420 IRN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 9e-71 | 256 | 388 | 15 | 146 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 9e-71 | 256 | 388 | 15 | 146 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_11925 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235172 | 1e-177 | AC235172.1 Glycine max strain Williams 82 clone GM_WBb0002N17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020217076.1 | 0.0 | B3 domain-containing transcription factor VRN1 isoform X1 | ||||
Swissprot | Q8L3W1 | 1e-128 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A151TG43 | 0.0 | A0A151TG43_CAJCA; B3 domain-containing transcription factor VRN1 | ||||
STRING | XP_007131905.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-116 | B3 family protein |
Publications ? help Back to Top | |||
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