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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_11822 | ||||||||
Common Name | KK1_012185 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | ARR-B | ||||||||
Protein Properties | Length: 246aa MW: 28349 Da PI: 6.3431 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 69.8 | 4.2e-22 | 188 | 237 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kpr+ W++eLH++Fv+av q+ G +kA Pk+ile+m+++++t++h++SHLQ C.cajan_11822 188 KPRIMWSSELHNQFVKAVMQI-GVDKAKPKEILEVMQIPDMTRDHIASHLQ 237 79*******************.***************************** PP | |||||||
2 | Response_reg | 57.7 | 6.5e-20 | 20 | 125 | 1 | 106 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 vl vd +p++ +++q++ + y +v +++d al+ ++ek+ +D+il+ + mp mdG+e++++ +e ++pii+++ ++++ + +a++ Ga C.cajan_11822 20 VLAVDSDPAISTIIKQLCFQCIY-HVITCSDTLLALNHVREKKdcFDMILIEVHMPIMDGYEFIQHVSKEI-NVPIIMMSLDDAPSAVMKAIEHGA 113 799********************.999************99999***********************8877.9*********************** PP SEEEESS--HHH CS Response_reg 95 kdflsKpfdpee 106 d+ Kp ++++ C.cajan_11822 114 CDYWIKPLHENQ 125 *******98887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 1.14E-26 | 17 | 146 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.4E-29 | 17 | 150 | No hit | No description |
SMART | SM00448 | 1.9E-16 | 18 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 32.614 | 19 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 5.1E-17 | 20 | 126 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 5.63E-17 | 21 | 133 | No hit | No description |
SuperFamily | SSF46689 | 4.48E-15 | 186 | 242 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.8E-22 | 187 | 238 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-20 | 188 | 241 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MAKLLIEEDV PFKFPAGLRV LAVDSDPAIS TIIKQLCFQC IYHVITCSDT LLALNHVREK 60 KDCFDMILIE VHMPIMDGYE FIQHVSKEIN VPIIMMSLDD APSAVMKAIE HGACDYWIKP 120 LHENQFKIMW KHVVKKLWSE NKLPKKNDSE FTSSNIDALV RYRKNSSSNS KESDADESED 180 CYTLLTKKPR IMWSSELHNQ FVKAVMQIGV DKAKPKEILE VMQIPDMTRD HIASHLQVCF 240 LYAFET |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-13 | 187 | 237 | 4 | 54 | ARR10-B |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 145 | KKLWSENKLPKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_11822 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003554991.1 | 1e-90 | two-component response regulator ORR21 | ||||
Refseq | XP_028217351.1 | 1e-90 | two-component response regulator ORR21-like | ||||
TrEMBL | A0A151TFT1 | 0.0 | A0A151TFT1_CAJCA; Two-component response regulator ARR2 | ||||
STRING | GLYMA19G06751.1 | 4e-90 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14524 | 5 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 1e-62 | response regulator 2 |