PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_11088
Common NameKK1_011412
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 869aa    MW: 96331.3 Da    PI: 4.93
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_11088genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.66.7e-193783148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEde+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
    C.cajan_11088 37 KGQWTPEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83
                     799****************************9.************986 PP
2Myb_DNA-binding64.71.7e-2089135148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEde+++d+v+++G++ W+tIa++++ gR +kqc++rw+++l
    C.cajan_11088  89 KGPWSKEEDEIIIDLVNRFGPKKWSTIAQHLP-GRIGKQCRERWHNHL 135
                      79******************************.*************97 PP
3Myb_DNA-binding52.61.1e-16141183145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE++ l++a++ +G++ W+  a+ ++ gRt++ +k++w+
    C.cajan_11088 141 KEAWTQEEELALIRAHQVYGNR-WAELAKLLP-GRTDNAIKNHWN 183
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.4713283IPR017930Myb domain
SuperFamilySSF466895.6E-163389IPR009057Homeodomain-like
SMARTSM007171.0E-153685IPR001005SANT/Myb domain
PfamPF002491.7E-163783IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-253995IPR009057Homeodomain-like
CDDcd001671.60E-144083No hitNo description
PROSITE profilePS5129431.83784139IPR017930Myb domain
SuperFamilySSF466892.92E-3186182IPR009057Homeodomain-like
SMARTSM007171.5E-1888137IPR001005SANT/Myb domain
PfamPF002491.5E-1889135IPR001005SANT/Myb domain
CDDcd001672.38E-1691135No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2796139IPR009057Homeodomain-like
PROSITE profilePS5129421.109140190IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-22140190IPR009057Homeodomain-like
SMARTSM007171.5E-16140188IPR001005SANT/Myb domain
PfamPF002497.2E-15141184IPR001005SANT/Myb domain
CDDcd001675.94E-13143183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 869 aa     Download sequence    Send to blast
MEVDRTIPVA SDGVIDGVQK IRALQGRTTG PTRRSTKGQW TPEEDEILRK AVQRFKGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IDLVNRFGPK KWSTIAQHLP  120
GRIGKQCRER WHNHLNPTIN KEAWTQEEEL ALIRAHQVYG NRWAELAKLL PGRTDNAIKN  180
HWNSSVKKKL ESYLASGLLT HRLDLTDLTN ISSLDYVQDS SQLQNDCIAP SESHDMVNVP  240
FQTSVGLSVT SLESIKAEQM LMSDEECCRI LFSEAINDEC FSSGDYNKGV NMIDLTGCSS  300
FLGQSSLPSV PSGVSSTGDR YQHVYTTEVN QLVGSEDQQF VSRTQDNIIY ANDLSSSPCI  360
QRIDSAEMQE PSDVVQDNSK LVPVNSFGCG SDVEQTSYPT DEKSNVHTEQ EETGALCYEP  420
PRFPASLDIP FLSCDLVQSG GDMQQEFSPL GIRQFMMSSM NCLTPFRLWD SPSHGSSPDA  480
LLKSAAKTFT STPSILKKRN RELLSPLSDK RIDKKLEIEM TSTLIKNFSR LDVMFDDNET  540
QGGDSLPPSS VHKGDSGASV EDNKENCGQA VRVEKNKSAI LDDEKSEKDL GDSNSQDEIK  600
QQQPLDADSE IKNDVSAAAE TVQQPSGILV EHDMNDLLLY SPGQVKLKSE RVLTLSARTK  660
KGSGSRINSP SVWIKERERL SVAVTCVQSI SSSGPGDNSG DHTAKDGDLE TCSIFGGTPF  720
RKSIESPSAW KSPWPFSTFL SSPRIDTEIT IEDFGYFLSP GDRSYDAIGL MKQISEQTAA  780
QYASAHEILG NETPKALPKD ASGIDRDGDQ ENIDPQNQHR NHSQLASSAL VERRILDFSE  840
CGTPVKGENS KTSAMSFSSP SSYLLKGFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-70371906159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-70371906159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_11088
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020217306.10.0transcription factor MYB3R-1
RefseqXP_020217307.10.0transcription factor MYB3R-1
SwissprotQ9S7G71e-105MB3R1_ARATH; Transcription factor MYB3R-1
TrEMBLA0A151TDT20.0A0A151TDT2_CAJCA; Myb-related protein 3R-1
STRINGGLYMA06G08660.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.11e-107Homeodomain-like protein
Publications ? help Back to Top
  1. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]