PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_10645 | ||||||||
Common Name | KK1_010954 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | bHLH | ||||||||
Protein Properties | Length: 509aa MW: 56423.1 Da PI: 6.1588 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48 | 2.2e-15 | 337 | 383 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ +L+el+P++ K +Ka++L A+eY+ Lq C.cajan_10645 337 VHNLSERRRRDRINEKMRTLQELIPNC-----NKADKASMLDDAIEYLTTLQ 383 6*************************8.....6***************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.91E-16 | 329 | 387 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.7E-20 | 330 | 391 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.85E-20 | 330 | 393 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.46 | 333 | 382 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.3E-13 | 337 | 383 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-16 | 339 | 388 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 509 aa Download sequence Send to blast |
PLHELYYVAK GKLDSKEMNN NTCGTVDQSS TLNNDLFELV WEKGQISVQG QSSRARKNPN 60 CKSFPSHSPR REVGYINANA NNVTNTRIGK YENLGGELDV SEKEEDMVMP WWNYGVDDSL 120 QHGYNSDLFH QLSGVTMNGL SSSDNFSLLD RRNNCNKVSR DTHKHSSFAS VSRVENIAEN 180 NTKGEDTQIP SFSSGFSSLK MERQGLTMCS NSSTVMNFSH FAKPAAMVRA NLEYLTSRSA 240 NISKIGQTSN LVVGESENKG EEAAAKNVEP TIVSSSVCSG NGAERGSGDP NQNLKQKSRD 300 TEDFEWQSED LEEESVGVKK DVPAPRVGSK RNRSAEVHNL SERRRRDRIN EKMRTLQELI 360 PNCNKADKAS MLDDAIEYLT TLQLQLQIMS MGSGLCMPAM MLPPGMQHMY GSPHMSPYSG 420 IGVGMQMRLG MGMHDGNDEC YRFPMIQGNQ HTQVFGLPMP MPHAPIFSFS ADQPFMSPST 480 LGLNACETMD PMPQHVQNNN ACSTNQVLL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 341 | 346 | ERRRRD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_10645 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020212751.1 | 0.0 | transcription factor PIF3 isoform X2 | ||||
TrEMBL | A0A151TXB2 | 0.0 | A0A151TXB2_CAJCA; Transcription factor PIF3 (Fragment) | ||||
STRING | GLYMA19G41261.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5271 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 3e-62 | phytochrome interacting factor 3 |