PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_10450
Common NameKK1_010751
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C3H
Protein Properties Length: 399aa    MW: 44142.4 Da    PI: 9.4567
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_10450genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH331e-10729527
                   --SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                   +C +++rtG C yG+rC+++H++
  C.cajan_10450  7 NCVYYMRTGACGYGSRCRYNHPR 29
                   7********************96 PP
2zf-CCCH27.17.1e-095777727
                   SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  7 rffartGtCkyGdrCkFaHgp 27
                   +++++tGtCk+ ++CkF+H++
  C.cajan_10450 57 QYYLKTGTCKFAASCKFHHPK 77
                   59*****************96 PP
3zf-CCCH36.39.4e-1298121427
                    ---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                    ++C+++++tG+Ck+G +CkF+H++
  C.cajan_10450  98 KECSYYLKTGQCKFGITCKFHHPQ 121
                    78********************97 PP
4zf-CCCH33.76.1e-11228253227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    ++++C+++++tG Ck+G  C++ H++
  C.cajan_10450 228 GEPECQYYLKTGDCKFGLACRYYHPR 253
                    5799********************96 PP
5zf-CCCH27.74.7e-09278296826
                    GGGGTS--TTTTT-SS-SS CS
        zf-CCCH   8 ffartGtCkyGdrCkFaHg 26 
                    f++++G+Ck+G++CkF H+
  C.cajan_10450 278 FYLQNGHCKFGSTCKFDHP 296
                    8*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.8E-4429IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6531IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-8729IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.108730IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5829IPR000571Zinc finger, CCCH-type
SMARTSM0035615477IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-55777IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.5825778IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.27794122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-695122IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-596121IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-997121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4100120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.136226254IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4226253IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-8228253IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5230254IPR000571Zinc finger, CCCH-type
SMARTSM003560.63275297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.277278298IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-6278296IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0016740Molecular Functiontransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MWHLTLNCVY YMRTGACGYG SRCRYNHPRD RRDFFLKFIW KLLSFQFKVV ILILGGQYYL  60
KTGTCKFAAS CKFHHPKNGG GYLSQAPLNV YGYPLQEKEC SYYLKTGQCK FGITCKFHHP  120
QPADASLPAS APQFYQQVQS PTIPLPEQYG GASTSLRVAR PFVLSGSYVQ GAYGPILLSP  180
GVVPFPGWSH YSLSSPTSAF ARPYTPLSST IGPSGNSLKN QLFPERLGEP ECQYYLKTGD  240
CKFGLACRYY HPRDHIVARP LLSPIGLPLR PWVQPYAFYL QNGHCKFGST CKFDHPLGSM  300
RYSPSVSSLI EVPITPYPVG SLLPHLASST SSELWFELIS GSKKESHSAR IPFGNSSATS  360
VGLIFSQSGS GSLSDVQLSS QSSAPLSNSR STRQSDEIR
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_10450
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937451e-149BT093745.1 Soybean clone JCVI-FLGm-17P23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029127023.10.0zinc finger CCCH domain-containing protein 32
SwissprotQ84W911e-142C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A151TWU00.0A0A151TWU0_CAJCA; Zinc finger CCCH domain-containing protein 32
STRINGGLYMA02G17260.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-136C3H family protein