PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_10099 | ||||||||
Common Name | KK1_010384 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | AP2 | ||||||||
Protein Properties | Length: 548aa MW: 60572.3 Da PI: 6.5516 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.6 | 2.3e-11 | 162 | 218 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g C.cajan_10099 162 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 218 57*******************5444.2455536655.779999**************98 PP | |||||||
2 | AP2 | 47.1 | 6e-15 | 263 | 312 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g C.cajan_10099 263 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 312 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.2E-9 | 162 | 218 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.54E-19 | 162 | 228 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-15 | 162 | 228 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.504 | 163 | 226 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-12 | 163 | 227 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-23 | 163 | 232 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-6 | 164 | 175 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.36E-18 | 261 | 322 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.20E-24 | 261 | 322 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.1E-18 | 262 | 321 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.375 | 262 | 320 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.6E-33 | 262 | 326 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-9 | 263 | 312 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-6 | 302 | 322 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000723 | Biological Process | telomere maintenance | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0019827 | Biological Process | stem cell population maintenance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 548 aa Download sequence Send to blast |
MNNNWLSFPL SPTHSSLPAH DLQATQYHQF SLGLVNENME NPFQNHDWNL INSHSSNEVP 60 KVADFLGVSK SENQSDLAAL NEIQSNDSDY LFTNNSLVPM QNPVVDTPSN DYQENGNSNL 120 QSLTLSMGSG KDSTCETSGE NSTNTVEAAP RRTLDTFGQR TSIYRGVTRH RWTGRYEAHL 180 WDNSCRREGQ SRKGRQGGYD KEEKAARAYD LAALKYWGTS TTTNFPISNY EKELDEMKHM 240 TRQEFVAAIR RKSSGFSRGA SMYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTEEEAA 300 EAYDIAAIKF RGLNAVTNFD MSRYDVKAIL ESNTLPIGGG AAKRLKEAQA LESSRKREEM 360 IALGSSTFQY GTSSSSRLHH AYPLMQHHQF EQPQPLLTLQ NHDIGSHFSH QDPSSLHQGY 420 IQTQLQLHQQ SGVSSYLQNN AQLYNGYLQN HPALLQGMMN IGSSSSSSSV LDNNNNSNNN 480 NSNVGGFVNG FGMASNNAAS GNAVGTAEEL GLVKVDYDMP AGGYGGWSAA AAESMQTSNG 540 GVFTMWNE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_10099 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU677381 | 0.0 | EU677381.1 Glycine max PLETHORA 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020213568.1 | 0.0 | AP2-like ethylene-responsive transcription factor PLT2 | ||||
Refseq | XP_020213569.1 | 0.0 | AP2-like ethylene-responsive transcription factor PLT2 | ||||
Swissprot | Q5YGP7 | 0.0 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | A0A151TVR7 | 0.0 | A0A151TVR7_CAJCA; AP2-like ethylene-responsive transcription factor PLT2 | ||||
STRING | XP_007131997.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4942 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 0.0 | AP2 family protein |