PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_10032 | ||||||||
Common Name | KK1_010316 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | Trihelix | ||||||||
Protein Properties | Length: 575aa MW: 65803.7 Da PI: 6.3542 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 94.6 | 9.1e-30 | 122 | 207 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea C.cajan_10032 122 RWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 207 8*************************************999*****************************98..55667*******85 PP | |||||||
2 | trihelix | 41.6 | 3.3e-13 | 422 | 501 | 2 | 84 |
trihelix 2 WtkqevlaLiearremeerlr.rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 W+++e+ L ++r eme+r+ +g++++ Wee++ km+ g+ers+ kekwe ++ + k+g+kkr +e+s+ c +fd+ C.cajan_10032 422 WPESEITRLQQLRAEMETRYIqNGCSEEVMWEEIATKMACFGYERSALVFKEKWETMSSY---AKDGNKKR-KENSRGCFFFDN 501 ******************986269**********************************98...56777776.567789999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.12 | 115 | 180 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.31 | 119 | 182 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 1.5E-20 | 122 | 208 | No hit | No description |
CDD | cd12203 | 4.60E-20 | 122 | 187 | No hit | No description |
SMART | SM00717 | 22 | 418 | 481 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 4.1E-10 | 420 | 503 | No hit | No description |
PROSITE profile | PS50090 | 5.575 | 421 | 479 | IPR017877 | Myb-like domain |
CDD | cd12203 | 1.21E-15 | 422 | 484 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046621 | Biological Process | negative regulation of organ growth | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048498 | Biological Process | establishment of petal orientation | ||||
GO:0090428 | Biological Process | perianth development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 575 aa Download sequence Send to blast |
MEMEDHHHHH HHHEQQQQQY GITDLRQLSS HFPSMPPQPT AELFPAGHPN LAATQHYEMM 60 MFGRQVADIM PRCLHDFAST DSATNTTIAV ATPTTTSAST PPLSCLEAET AGCIAGDAST 120 GRWPRQETLT LLEIRSRLDS KFKEANQKGP LWDEVSRIMS EEHGYQRSGK KCREKFENLY 180 KYYKKTKEGK AGRQDGKHYR FFRQLEALYG ENSNQASVPE TNFGSSSLRF HTSSHTNPSQ 240 TNQEMFQSQK HCDSLSLTNS TDLDTSSSDD NDQNSTGGLK DNDSMEKRRK RVSGRSWKVK 300 IKDFIDSQMK KLVEKQEEWL DKLTKTLEQK EKERVLREEE WRRQEAARLE REHKFWAKER 360 AWIEARDAAL MEALQKLTGN EIKSTQSPEG LMVTGIQNHS ENQNEDGSEI LNSTIARGAE 420 SWPESEITRL QQLRAEMETR YIQNGCSEEV MWEEIATKMA CFGYERSALV FKEKWETMSS 480 YAKDGNKKRK ENSRGCFFFD NSDQSSLYNQ GGSYCDINDQ RHETGRMQTN DGSSPSNSNV 540 GNAVAGDNCF PFLMAEGGNL WENYSLKVNK ANQNQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_10032 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020213533.1 | 0.0 | trihelix transcription factor PTL | ||||
Swissprot | Q9LZS0 | 1e-144 | PTL_ARATH; Trihelix transcription factor PTL | ||||
TrEMBL | A0A151TVI5 | 0.0 | A0A151TVI5_CAJCA; Uncharacterized protein | ||||
STRING | GLYMA19G37660.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2022 | 34 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03680.1 | 1e-121 | Trihelix family protein |
Publications ? help Back to Top | |||
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