PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_09967 | ||||||||
Common Name | KK1_010251 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 271aa MW: 29694.2 Da PI: 8.6586 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.9 | 0.0014 | 93 | 115 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H C.cajan_09967 93 YECKTCNRCFPSFQALGGHRASH 115 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 13.5 | 0.00021 | 179 | 201 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H C.cajan_09967 179 HECSICGAEFTSGQALGGHMRRH 201 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.23E-6 | 92 | 115 | No hit | No description |
PROSITE profile | PS50157 | 10.471 | 93 | 120 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.14 | 93 | 115 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.6E-10 | 93 | 117 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 95 | 115 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.23E-6 | 174 | 201 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.6E-4 | 177 | 201 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.4E-12 | 178 | 202 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.723 | 179 | 201 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.01 | 179 | 201 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 181 | 201 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MQIMKGKRTK RQRLPSPLRL TMSTTCSSAG RSSTDNSIGF DHLPTTSRNE EEDMANCLIL 60 LAQGHNAPKP SRKSPPHVAA PGDHNNNEGL YLYECKTCNR CFPSFQALGG HRASHKKSKT 120 STEEKQGVIT TFGNEVDHHK HHGDCDHPTS TNLTLQLSTA LYNNNSSTRT IVNAKSKVHE 180 CSICGAEFTS GQALGGHMRR HRNLLSTPTT VSTIRANGGD GSPEVKHKDV LDLDLNLPAP 240 EDDHRESKPF PFQSKGKVIA FSATSLVDCH Y |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_09967 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC967127 | 1e-54 | KC967127.1 Glycine max C2H2-type zinc finger protein 6 (ZFP6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020213961.1 | 0.0 | zinc finger protein ZAT5 | ||||
TrEMBL | A0A151TVH3 | 0.0 | A0A151TVH3_CAJCA; Zinc finger protein 1 | ||||
STRING | GLYMA19G37010.2 | 1e-133 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 1e-53 | C2H2 family protein |