PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_09230 | ||||||||
Common Name | KK1_009490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | ARR-B | ||||||||
Protein Properties | Length: 665aa MW: 73485.7 Da PI: 6.4727 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 79.6 | 3.8e-25 | 204 | 255 | 1 | 53 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQ + C.cajan_09230 204 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVEKLTRENVASHLQAF 255 79*******************.*****************************87 PP | |||||||
2 | Response_reg | 76.2 | 1.2e-25 | 20 | 128 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 vl vdD+p+ + +l+++l++ +y +v+++ ++ al+ll+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+g+ +++ + + Ga C.cajan_09230 20 VLAVDDDPTCLLVLETLLRRCQY-HVTTTNQAITALALLREHKdkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDTKLVMKGIAHGA 113 799********************.***************999889*******************87754.558*********************** PP SEEEESS--HHHHHH CS Response_reg 95 kdflsKpfdpeelvk 109 d+l Kp+ +eel + C.cajan_09230 114 CDYLLKPVRMEELKN 128 ************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 3.6E-160 | 1 | 660 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 1.6E-42 | 17 | 141 | No hit | No description |
SuperFamily | SSF52172 | 1.71E-36 | 17 | 141 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 4.2E-32 | 18 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.329 | 19 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 4.5E-23 | 20 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.14E-27 | 21 | 134 | No hit | No description |
PROSITE profile | PS51294 | 11.783 | 201 | 260 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.05E-17 | 201 | 258 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-25 | 202 | 257 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.3E-24 | 204 | 258 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 665 aa Download sequence Send to blast |
MTVDNRMNDS PDDFPVGMRV LAVDDDPTCL LVLETLLRRC QYHVTTTNQA ITALALLREH 60 KDKFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSANG DTKLVMKGIA HGACDYLLKP 120 VRMEELKNIW QHVIRRKKFD SKEKKKTSNL DKPTSDSGNG LGSSGAGNSE QNEKLTKKRK 180 DQDEDEDEEQ ENDQDNEDPS TQKKPRVVWS VELHRKFVAA VNQLGIDKAV PKKILDLMNV 240 EKLTRENVAS HLQAFFLFSS PLLYLKRISC VANQQANMVA ALGGADASYL RMSSVSGVGH 300 LQTLSGSGQL QNNGFRSFPS SGIINRLNTP AGLNVHGFPS GVLQLSQSQN LNHNDHLKFQ 360 SAMVPVNQNG IQGMPMSVGL DQLQNNKGVI SVHFDAKTFP ILNKLSDPRP KVTTSGSHTP 420 DLGISNNALM VEPRLQGTQG SVRYETLSSS PASQNSEFSL SMLDQGRYSD NWSSAVQPSV 480 IQTNSYPPSE CFRRTNIRPT DNMASVPLQG GNLSGPSITS LSRQPHDSIT DMHSEGVIFT 540 NRPGLLSSNA PFQGWDDHSQ DATHHSNIMF GSINSLNPVN GAATDSNLHR NLDFSYCDPL 600 QMKHDGFVEL TEETSLKHQG NIMNQQKSQQ SGFSNNLGSL EDLVSSMMKQ VITFTQYTYI 660 LKFFP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-22 | 200 | 255 | 1 | 56 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_09230 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093836 | 0.0 | BT093836.1 Soybean clone JCVI-FLGm-24O12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020212720.1 | 0.0 | two-component response regulator ARR12 isoform X1 | ||||
Swissprot | Q6K8X6 | 1e-136 | ORR23_ORYSJ; Two-component response regulator ORR23 | ||||
TrEMBL | A0A151TTG4 | 0.0 | A0A151TTG4_CAJCA; Two-component response regulator | ||||
STRING | GLYMA04G06650.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-120 | response regulator 12 |
Publications ? help Back to Top | |||
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