PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_08852
Common NameKK1_009111
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 329aa    MW: 37664.5 Da    PI: 8.5993
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_08852genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.9e-181560147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l+++v+q+G  +W++Ia++++ gR++k+c++rw++ 
    C.cajan_08852 15 RGHWRPAEDEKLKQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 60
                     899*****************************.***********996 PP
2Myb_DNA-binding60.34.1e-1967110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
    C.cajan_08852  67 RRPFTEEEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHV 110
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.5261061IPR017930Myb domain
SuperFamilySSF466891.27E-2914108IPR009057Homeodomain-like
SMARTSM007176.2E-151463IPR001005SANT/Myb domain
PfamPF002493.2E-171560IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-271668IPR009057Homeodomain-like
CDDcd001673.47E-141859No hitNo description
PROSITE profilePS5129428.36662116IPR017930Myb domain
SMARTSM007172.4E-1666114IPR001005SANT/Myb domain
PfamPF002496.7E-1667109IPR001005SANT/Myb domain
CDDcd001678.47E-869109No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2169115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEDSSAGEDT KTCPRGHWRP AEDEKLKQLV EQYGAQNWNS IAEKLQGRSG KSCRLRWFNQ  60
LDPRINRRPF TEEEEERLLA AHRIHGNKWA LIARLFPGRT DNAVKNHWHV IMARKQREQS  120
KLCGKRSFQD VYNDSNNTSS FLEKRTPQSQ DLLFSTRFGL ENGRFFDFRS LDNNKDKDNN  180
NNNHNHRIVA DTPSSSLASW NFASVPTTTN GSTVVDRKGG RDYFNSASSD IYLSECSRTS  240
DRSFLYRIYP NPAFSLPNYK RVVPSPFGFL ASSDDGIGRI KRELMSFGDN SSTFSKLEKD  300
HQQTNEDETN TEPKEVPFID FLGVGVSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-32151157107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_08852
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-180AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020213108.10.0transcription factor MYB54
TrEMBLA0A151TS750.0A0A151TS75_CAJCA; Transcription factor MYB44
STRINGGLYMA06G12691.11e-179(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73410.11e-63myb domain protein 54